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Plate causing numerical issues #43

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gwaybio opened this issue May 22, 2020 · 1 comment
Open

Plate causing numerical issues #43

gwaybio opened this issue May 22, 2020 · 1 comment
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@gwaybio
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gwaybio commented May 22, 2020

In the cell health project, I noticed some strange behavior with a specific plate.

The plate is SQ00015221 coming from plate map C-7161-01-LM6-011. The offending features seem to be based on Correlation_RWC.

We include the plate in this repo, but I am adding a note here that we should revisit. I have a sneaking suspicion that the issue stems from the missing values and zero issue noted in cytomining/pycytominer#79 and described in cytomining/cytominergallery#62

@gwaybio gwaybio added the help wanted Extra attention is needed label May 22, 2020
@hkhawar
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hkhawar commented May 22, 2020

I have checked my variable list it was excluded from the analysis. Probably it got removed with the feature selection step using Cytominer scripts

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