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find_region_chimeras.Rd
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find_region_chimeras.Rd
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% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/tzara.R
\name{find_region_chimeras}
\alias{find_region_chimeras}
\title{Check for bimeras in a subset of regions}
\usage{
find_region_chimeras(region_table, chimset, sample_column, read_column,
...)
}
\arguments{
\item{region_table}{(\code{data.frame} containing all the regions in
\code{chimset})}
\item{chimset}{(\code{character} vector, usually of length 3) regions to
concatenate and then check for bimeras.}
\item{sample_column}{(\code{character} scalar) extra column in region_table
which identifies different samples; if present, use
\code{\link[dada2]{isBimeraDenovoTable}} instead of
\code{\link[dada2]{isBimeraDenovo}}.}
\item{read_column}{(\code{character} scalar) column in region_table
which identifies different reads.}
\item{...}{passed on to \code{\link[dada2]{isBimeraDenovoTable}} or
\code{\link[dada2]{isBimeraDenovo}}.}
}
\value{
an \code{character} vector giving the read IDs of
\code{region_table} which were detected as bimeras.
}
\description{
Check for bimeras in a subset of regions
}