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what's meaning of "prediction confidence"? #169

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BohanSi opened this issue Mar 25, 2024 · 0 comments
Open

what's meaning of "prediction confidence"? #169

BohanSi opened this issue Mar 25, 2024 · 0 comments

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@BohanSi
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BohanSi commented Mar 25, 2024

I see the issue#85, and I have the same question. In the paper "Attention mask for generative pretraining" part, you said “scGPT selects the top 1/K genes from the unknown set with the highest prediction confidence to be included as known genes in the next iteration i + 1.” I'd like to know how to calculate the prediction confidence of generated genes.
And I see the Supplementary Fig. 1b, does it mean the highest attention score among the unknown genes?

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