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count_snps.html
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count_snps.html
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<h1>Count the number/proportion of present/missing sites in each sample</h1>
<small class="dont-index">Source: <a href='https://github.com/bodkan/admixr/blob/master/R/utils.R'><code>R/utils.R</code></a></small>
<div class="hidden name"><code>count_snps.Rd</code></div>
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<p>Count the number/proportion of present/missing sites in each sample</p>
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<pre class="usage"><span class='fu'>count_snps</span>(<span class='no'>data</span>, <span class='kw'>missing</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>, <span class='kw'>prop</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>)</pre>
<h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
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<colgroup><col class="name" /><col class="desc" /></colgroup>
<tr>
<th>data</th>
<td><p>EIGENSTRAT data object.</p></td>
</tr>
<tr>
<th>missing</th>
<td><p>Count present SNPs or missing SNPs?</p></td>
</tr>
<tr>
<th>prop</th>
<td><p>Calculate the proportion instead of counts?</p></td>
</tr>
</table>
<h2 class="hasAnchor" id="value"><a class="anchor" href="#value"></a>Value</h2>
<p>A data.frame object with SNP counts/proportions.</p>
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