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Data directory structure #8

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gm039 opened this issue Jul 17, 2020 · 1 comment
Open

Data directory structure #8

gm039 opened this issue Jul 17, 2020 · 1 comment

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@gm039
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gm039 commented Jul 17, 2020 •
edited

Hi,

How to perform 3D segmentation to the custom dataset with 3D volume and corresponding segmentation.
A dataset file structure might be helpful for iseg_2017 example.

Thanks
@iliasprc
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The training code extracts random patches from the medical images which are saved in the folder specified in the dataloader
Check this line

MedicalZooPytorch/lib/medloaders/iseg2017.py

Line 55 in 69ad01a

self.sub_vol_path = self.root + '/iseg_2017/generated/' + mode + subvol + '/'

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@iliasprc @gm039