.gitignore

# For augur repo #
environment*
ec2-startup.sh
augur/data/
augur/output/
auspice/data/
auspice/analysis/figures/
auspice/analysis/prediction/
validation
temp_*
tmp
*.pdf

# Index files
auspice/h3n2/
auspice/h1n1pdm/
auspice/vic/
auspice/yam/
auspice/gisaid/
auspice/who/
auspice/cdc/
auspice/crick/
auspice/niid/
auspice/vidrl/
auspice/deprecated/

# Jekyll #
##########
.jekyll-metadata
_site/

# Tex #
#######
*.aux
*.bbl
*.blg
*.log
*.toc

# Compiled source #
###################
*.com
*.class
*.dll
*.exe
*.o
*.so
*.pyc

# LaTeX intermediaries #
########################
*.aux
*.log
*.bbl
*.blg
*.out

# Packages #
############
*.7z
*.dmg
*.gz
*.iso
*.jar
*.rar
*.tar
*.zip

# OS generated files #
######################
.DS_Store
.DS_Store?
._*
.Spotlight-V100
.Trashes
Icon?
ehthumbs.db
Thumbs.db

# autosave #
############
*~
.ipynb_checkpoints

# IDE #
#######
*sublime*

# cluster log #
###############
*.sh.*

# Local Netlify folder
.netlify