/
test_chemistry.py
612 lines (494 loc) · 21.3 KB
/
test_chemistry.py
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# -*- coding: utf-8 -*-
from functools import reduce
from operator import attrgetter, add
import sys
from sympy import nsimplify
import pytest
from ..util.arithmeticdict import ArithmeticDict
from ..util.testing import requires
from ..util.parsing import parsing_library
from ..units import default_units, units_library, to_unitless, allclose
from ..chemistry import (
equilibrium_quotient,
Substance,
Species,
Reaction,
Equilibrium,
balance_stoichiometry,
)
if sys.version_info < (3, 6, 0):
class ModuleNotFoundError(ImportError):
pass
@requires("numpy")
def test_equilibrium_quotient():
assert (
abs(equilibrium_quotient([2.3, 3.7, 5.1], (-1, -1, 1)) - 5.1 / 2.3 / 3.7)
< 1e-14
)
@requires(parsing_library)
def test_Substance():
s = Substance.from_formula("H+")
assert s.composition == {0: 1, 1: 1}
assert s.charge == 1
assert abs(s.mass - 1.008) < 1e-3
assert s in {s: 1}
assert hash(s) != hash(Substance.from_formula("He"))
def test_Substance__2():
H2O = Substance(
name="H2O", charge=0, latex_name=r"\mathrm{H_{2}O}", data={"pKa": 14}
) # will_be_missing_in='0.8.0', use data=...
OH_m = Substance(name="OH-", charge=-1, latex_name=r"\mathrm{OH^{-}}")
assert sorted([OH_m, H2O], key=attrgetter("name")) == [H2O, OH_m]
@requires(parsing_library)
def test_Substance__from_formula():
H2O = Substance.from_formula("H2O")
assert H2O.composition == {1: 2, 8: 1}
assert H2O.latex_name == "H_{2}O"
assert H2O.unicode_name == u"H₂O"
assert H2O.html_name == u"H<sub>2</sub>O"
@requires(parsing_library)
def test_Species():
s = Species.from_formula("H2O")
assert s.phase_idx == 0
mapping = {"(aq)": 0, "(s)": 1, "(g)": 2}
assert Species.from_formula("CO2(g)").phase_idx == 3
assert Species.from_formula("CO2(g)", mapping).phase_idx == 2
assert Species.from_formula("CO2(aq)", mapping).phase_idx == 0
assert Species.from_formula("NaCl(s)").phase_idx == 1
assert Species.from_formula("NaCl(s)", phase_idx=7).phase_idx == 7
assert Species.from_formula("CO2(aq)", mapping, phase_idx=7).phase_idx == 7
uranyl_ads = Species.from_formula("UO2+2(ads)", phases={"(aq)": 0, "(ads)": 1})
assert uranyl_ads.composition == {0: 2, 92: 1, 8: 2}
assert uranyl_ads.phase_idx == 1
@requires(parsing_library)
def test_Species_default_phase_none():
with pytest.raises(ValueError):
Species.from_formula("CO2(aq)", default_phase_idx=None)
def test_Solute():
from ..chemistry import Solute
from ..util.pyutil import ChemPyDeprecationWarning
with pytest.warns(ChemPyDeprecationWarning):
w = Solute("H2O")
assert w.name == "H2O"
def test_Reaction():
substances = s_Hp, s_OHm, s_H2O = (
Substance("H+", composition={0: 1, 1: 1}),
Substance("OH-", composition={0: -1, 1: 1, 8: 1}),
Substance("H2O", composition={0: 0, 1: 2, 8: 1}),
)
substance_names = Hp, OHm, H2O = [s.name for s in substances]
substance_dict = {n: s for n, s in zip(substance_names, substances)}
r1 = Reaction({Hp: 1, OHm: 1}, {H2O: 1})
assert sum(r1.composition_violation(substance_dict)) == 0
assert r1.composition_violation(substance_dict, ["H+"]) == [0]
viol, cks = r1.composition_violation(substance_dict, True)
assert viol == [0] * 3 and sorted(cks) == [0, 1, 8]
assert r1.charge_neutrality_violation(substance_dict) == 0
r2 = Reaction({Hp: 1, OHm: 1}, {H2O: 2})
assert sum(r2.composition_violation(substance_dict)) != 0
assert r2.charge_neutrality_violation(substance_dict) == 0
r3 = Reaction({Hp: 2, OHm: 1}, {H2O: 2})
assert sum(r3.composition_violation(substance_dict)) != 0
assert r3.charge_neutrality_violation(substance_dict) != 0
assert r3.keys() == {Hp, OHm, H2O}
with pytest.raises(ValueError):
Reaction({Hp: -1, OHm: -1}, {H2O: -1})
assert r1 == Reaction({"H+", "OH-"}, {"H2O"})
r4 = Reaction({Hp, OHm}, {H2O}, 7)
ref = {Hp: -3 * 5 * 7, OHm: -3 * 5 * 7, H2O: 3 * 5 * 7}
r4.rate({Hp: 5, OHm: 3}) == ref
r5 = r4.copy()
assert r5 == r4
assert r5 != r1
lhs5, rhs5 = {"H+": 1, "OH-": 1}, {"H2O": 1}
r5 = Reaction(lhs5, rhs5)
assert r5.reac == lhs5 and r5.prod == rhs5
def test_Reaction__copy():
r1 = Reaction({"H2O"}, {"H2O"}, checks=())
r2 = r1.copy()
assert r1 == r2
r2.reac["H2O2"] = r2.reac.pop("H2O") # 1
r2.prod["H2O2"] = r2.prod.pop("H2O") # 1
assert r1.reac == {"H2O": 1} and r1.prod == {"H2O": 1}
@requires(parsing_library)
def test_Reaction__from_string():
r = Reaction.from_string("H2O -> H+ + OH-; 1e-4", "H2O H+ OH-".split())
assert r.reac == {"H2O": 1} and r.prod == {"H+": 1, "OH-": 1}
with pytest.raises(ValueError):
Reaction.from_string("H2O -> H+ + OH-; 1e-4", "H2O H OH-".split())
r2 = Reaction.from_string("H2O -> H+ + OH-; 1e-4; ref='important_paper'")
assert r2.ref == "important_paper"
with pytest.raises(ValueError):
Reaction.from_string("H2O -> H2O")
Reaction.from_string("H2O -> H2O; None; checks=()")
with pytest.raises(ValueError):
Reaction({"H2O": 2}, {"H2O2": 2, "O2": -2})
r4 = Reaction({"H+": 2, "OH-": 1}, {"H2O": 2}, 42.0)
assert Reaction.from_string(str(r4), "H+ OH- H2O") == r4
assert Reaction.from_string(str(r4), None) == r4
r5 = Reaction.from_string(
"H2O2 -> 0.5 O2 + H2O",
checks=[c for c in Reaction.default_checks if c != "all_integral"],
)
r6 = r5.copy()
assert r5 == r6
r7 = Reaction.from_string(
"H2O -> H + OH; None; data=dict(ref='foo; bar; baz;') # foobar"
)
assert r7.data["ref"] == "foo; bar; baz;"
@requires(parsing_library, units_library)
def test_Reaction_from_string__units():
r5 = Reaction.from_string("2 H2O2 -> O2 + 2 H2O; 1e-7/molar/second", "H2O O2 H2O2")
assert to_unitless(r5.param, 1 / default_units.molar / default_units.second) == 1e-7
r6 = Reaction.from_string("->", checks=())
assert r6.reac == {} and r6.prod == {}
r7 = Reaction.from_string("2 A -> B; exp(log(2e-3))*metre**3/mol/hour", None)
assert r7.reac == {"A": 2} and r7.prod == {"B": 1}
assert allclose(
r7.param,
2e-3 * default_units.metre ** 3 / default_units.mol / default_units.hour,
)
with pytest.raises(ValueError):
Reaction.from_string("2 A -> B; 2e-3/hour", None)
r8 = Reaction.from_string('A -> B; "k"')
assert r8.rate_expr().args is None
assert r8.rate_expr().unique_keys == ("k",)
r9 = Reaction.from_string("A -> B; 42.0")
assert r9.rate_expr().args == [42.0]
assert r9.rate_expr().unique_keys is None
Reaction.from_string("H+ + OH- -> H2O; 1e10/M/s", "H2O H+ OH-".split())
with pytest.raises(ValueError):
Reaction.from_string("H2O -> H+ + OH-; 1e-4/M/s", "H2O H+ OH-".split())
@requires(parsing_library, units_library)
def test_Reaction__check_integral():
Reaction(*balance_stoichiometry({"H2", "O2"}, {"H2O"}))
class MyInt:
def __init__(self, __data):
self.__data = __data
def __eq__(self, other):
return self.__data == other
def __lt__(self, other):
return self.__data < other
def __int__(self):
return self.__data
def __rsub__(self, other):
return other - self.__data
class MyOne:
def __eq__(self, other):
return 1 == other
def __lt__(self, other):
return 1 < other
def __int__(self):
return 1
def __rsub__(self, other):
return other - 1
Reaction({"H2": MyInt(2), "O2": MyOne()}, {"H2O": 2})
with pytest.raises(ValueError):
Reaction({"H2": 1, "O2": 0.5}, {"H2O": 1})
@requires(parsing_library, units_library)
def test_Substance__molar_mass():
mw_water = Substance.from_formula("H2O").molar_mass(default_units)
q = mw_water / ((15.9994 + 2 * 1.008) * default_units.gram / default_units.mol)
assert abs(q - 1) < 1e-3
@requires(units_library)
def test_Equilibrium__as_reactions():
s = default_units.second
M = default_units.molar
H2O, Hp, OHm = map(Substance, "H2O H+ OH-".split())
eq = Equilibrium({"H2O": 1}, {"H+": 1, "OH-": 1}, 1e-14)
rate = 1.31e11 / M / s
fw, bw = eq.as_reactions(kb=rate, units=default_units)
assert abs((bw.param - rate) / rate) < 1e-15
assert abs((fw.param / M) / bw.param - 1e-14) / 1e-14 < 1e-15
@requires(parsing_library)
def test_Reaction__latex():
keys = "H2O H2 O2".split()
subst = {k: Substance.from_formula(k) for k in keys}
r2 = Reaction.from_string("2 H2O -> 2 H2 + O2", subst)
assert r2.latex(subst) == r"2 H_{2}O \rightarrow 2 H_{2} + O_{2}"
r3 = Reaction.from_string("2 H2O -> 2 H2 + O2; 42; name='split'", subst)
assert (
r3.latex(subst, with_param=True, with_name=True)
== r"2 H_{2}O \rightarrow 2 H_{2} + O_{2}; 42; split"
)
assert (
r3.latex(subst, with_name=True)
== r"2 H_{2}O \rightarrow 2 H_{2} + O_{2}; split"
)
assert (
r3.latex(subst, with_param=True) == r"2 H_{2}O \rightarrow 2 H_{2} + O_{2}; 42"
)
assert r3.latex(subst) == r"2 H_{2}O \rightarrow 2 H_{2} + O_{2}"
@requires(parsing_library)
def test_Reaction__unicode():
keys = u"H2O H2 O2".split()
subst = {k: Substance.from_formula(k) for k in keys}
r2 = Reaction.from_string("2 H2O -> 2 H2 + O2", subst)
assert r2.unicode(subst) == u"2 H₂O → 2 H₂ + O₂"
r3 = Reaction.from_string("2 H2O -> 2 H2 + O2; 42; name='split'", subst)
assert r3.unicode(subst) == u"2 H₂O → 2 H₂ + O₂"
assert r3.unicode(subst, with_name=True) == u"2 H₂O → 2 H₂ + O₂; split"
assert (
r3.unicode(subst, with_name=True, with_param=True)
== u"2 H₂O → 2 H₂ + O₂; 42; split"
)
assert r3.unicode(subst, with_param=True) == u"2 H₂O → 2 H₂ + O₂; 42"
@requires(parsing_library)
def test_Reaction__html():
keys = "H2O H2 O2".split()
subst = {k: Substance.from_formula(k) for k in keys}
r2 = Reaction.from_string("2 H2O -> 2 H2 + O2", subst)
assert r2.html(subst) == "2 H<sub>2</sub>O → 2 H<sub>2</sub> + O<sub>2</sub>"
assert (
r2.html(subst, Reaction_coeff_fmt=lambda s: "<b>{0}</b>".format(s))
== "<b>2</b> H<sub>2</sub>O → <b>2</b> H<sub>2</sub> + O<sub>2</sub>"
)
assert (
r2.html(subst, Reaction_formula_fmt=lambda s: "<b>{0}</b>".format(s))
== "2 <b>H<sub>2</sub>O</b> → 2 <b>H<sub>2</sub></b> + <b>O<sub>2</sub></b>"
)
def test_Reaction__idempotency():
with pytest.raises(ValueError):
Reaction({"A": 1}, {"A": 1})
with pytest.raises(ValueError):
Reaction({}, {})
with pytest.raises(ValueError):
Reaction({"A": 1}, {"B": 1}, inact_reac={"B": 1}, inact_prod={"A": 1})
@requires("sympy")
def test_Equilibrium__eliminate():
e1 = Equilibrium({"A": 1, "B": 2}, {"C": 3})
e2 = Equilibrium({"D": 5, "B": 7}, {"E": 11})
coeff = Equilibrium.eliminate([e1, e2], "B")
assert coeff == [7, -2]
e3 = coeff[0] * e1 + coeff[1] * e2
assert e3.net_stoich("B") == (0,)
e4 = e1 * coeff[0] + coeff[1] * e2
assert e4.net_stoich("B") == (0,)
assert (-e1).reac == {"C": 3}
assert (e2 * -3).reac == {"E": 33}
@requires(parsing_library, units_library)
def test_Equilibrium__from_string():
assert Equilibrium.from_string("H2O = H+ + OH-").param is None
assert Equilibrium.from_string("H2O = H+ + OH-; 1e-14").param == 1e-14
assert Equilibrium.from_string("H2O = H+ + OH-; 1e-14*molar").param ** 0 == 1
with pytest.raises(ValueError):
Equilibrium.from_string("H+ + OH- = H2O; 1e-14*molar")
eq5 = Equilibrium.from_string(
"CO2(aq) = CO2(g);" "chempy.henry.HenryWithUnits(3.3e-4 * molar / Pa, 2400 * K)"
)
assert eq5.reac == {"CO2(aq)": 1}
def test_Equilibrium__cancel():
# 2B + C -> E
e1 = Equilibrium({"A": 26, "B": 20, "C": 7}, {"D": 4, "E": 7})
e2 = Equilibrium({"A": 13, "B": 3}, {"D": 2})
coeff = e1.cancel(e2)
assert coeff == -2
@requires("sympy")
def test_balance_stoichiometry():
# 4 NH4ClO4 -> 2 N2 + 4 HCl + 6H2O + 5O2
# 4 Al + 3O2 -> 2Al2O3
# ---------------------------------------
# 6 NH4ClO4 + 10 Al + -> 3 N2 + 6 HCl + 9 H2O + 5 Al2O3
reac, prod = balance_stoichiometry({"NH4ClO4", "Al"}, {"Al2O3", "HCl", "H2O", "N2"})
assert reac == {"NH4ClO4": 6, "Al": 10}
assert prod == {"Al2O3": 5, "HCl": 6, "H2O": 9, "N2": 3}
r3, p3 = balance_stoichiometry({"C2H6", "O2"}, {"H2O", "CO2"})
assert r3 == {"C2H6": 2, "O2": 7}
assert p3 == {"CO2": 4, "H2O": 6}
r4, p4 = balance_stoichiometry({"C7H5(NO2)3", "NH4NO3"}, {"CO", "H2O", "N2"})
assert r4 == {"C7H5(NO2)3": 2, "NH4NO3": 7}
assert p4 == {"CO": 14, "H2O": 19, "N2": 10}
a5, b5 = {"C3H5NO", "CH4", "NH3", "H2O"}, {"C2H6", "CH4O", "CH5N", "CH3N"}
formulas = list(set.union(a5, b5))
substances = dict(zip(formulas, map(Substance.from_formula, formulas)))
compositions = {k: ArithmeticDict(int, substances[k].composition) for k in formulas}
r5, p5 = balance_stoichiometry(a5, b5)
compo_reac = nsimplify(
dict(reduce(add, [compositions[k] * v for k, v in r5.items()]))
)
compo_prod = nsimplify(
dict(reduce(add, [compositions[k] * v for k, v in p5.items()]))
)
assert compo_reac == compo_prod
a6, b6 = map(
lambda x: set(x.split()), "CuSCN KIO3 HCl;CuSO4 KCl HCN ICl H2O".split(";")
)
r6, p6 = balance_stoichiometry(a6, b6)
assert r6 == dict(CuSCN=4, KIO3=7, HCl=14)
assert p6 == dict(CuSO4=4, KCl=7, HCN=4, ICl=7, H2O=5)
r7, p7 = balance_stoichiometry({"Zn+2", "e-"}, {"Zn"})
assert r7 == {"Zn+2": 1, "e-": 2}
assert p7 == {"Zn": 1}
r8, p8 = balance_stoichiometry({"Zn"}, {"Zn+2", "e-"})
assert r8 == {"Zn": 1}
assert p8 == {"Zn+2": 1, "e-": 2}
@requires("sympy")
def test_balance_stoichiometry__ordering():
reac, prod = "CuSCN KIO3 HCl".split(), "CuSO4 KCl HCN ICl H2O".split()
rxn = Reaction(*balance_stoichiometry(reac, prod))
res = rxn.string()
ref = "4 CuSCN + 7 KIO3 + 14 HCl -> 4 CuSO4 + 7 KCl + 4 HCN + 7 ICl + 5 H2O"
assert res == ref
@requires("sympy")
def test_balance_stoichiometry__simple():
# 4 NH4ClO4 -> 2 N2 + 4 HCl + 6H2O + 5O2
# 4 Al + 3O2 -> 2Al2O3
# ---------------------------------------
# 6 NH4ClO4 + 10 Al + -> 3 N2 + 6 HCl + 9 H2O + 5 Al2O3
reac, prod = balance_stoichiometry({"NH4ClO4", "Al"}, {"Al2O3", "HCl", "H2O", "N2"})
assert reac == {"NH4ClO4": 6, "Al": 10}
assert prod == {"Al2O3": 5, "HCl": 6, "H2O": 9, "N2": 3}
r2, p2 = balance_stoichiometry({"Na2CO3"}, {"Na2O", "CO2"})
assert r2 == {"Na2CO3": 1}
assert p2 == {"Na2O": 1, "CO2": 1}
@requires("sympy", "pulp")
@pytest.mark.parametrize("underdet", [False, None, True])
def test_balance_stoichiometry__impossible(underdet):
try:
from pulp import PulpSolverError
except ModuleNotFoundError:
from pulp.solvers import PulpSolverError # older version of PuLP
with pytest.raises((ValueError, PulpSolverError)):
r1, p1 = balance_stoichiometry({"CO"}, {"CO2"}, underdetermined=underdet)
@requires("sympy", "pulp")
def test_balance_stoichiometry__underdetermined():
try:
from pulp import PulpSolverError
except ModuleNotFoundError:
from pulp.solvers import PulpSolverError # older version of PuLP
with pytest.raises(ValueError):
balance_stoichiometry(
{"C2H6", "O2"}, {"H2O", "CO2", "CO"}, underdetermined=False
)
reac, prod = balance_stoichiometry({"C2H6", "O2"}, {"H2O", "CO2", "CO"})
r1 = {"C7H5O3-", "O2", "C21H27N7O14P2-2", "H+"}
p1 = {
"C7H5O4-",
"C21H26N7O14P2-",
"H2O",
} # see https://github.com/bjodah/chempy/issues/67
bal1 = balance_stoichiometry(r1, p1, underdetermined=None)
assert bal1 == (
{"C21H27N7O14P2-2": 1, "H+": 1, "C7H5O3-": 1, "O2": 1},
{"C21H26N7O14P2-": 1, "H2O": 1, "C7H5O4-": 1},
)
with pytest.raises(ValueError):
balance_stoichiometry({"C3H4O3", "H3PO4"}, {"C3H6O3"}, underdetermined=None)
for underdet in [False, True, None]:
with pytest.raises((ValueError, PulpSolverError)):
balance_stoichiometry({"C3H6O3"}, {"C3H4O3"}, underdetermined=underdet)
with pytest.raises(
ValueError
): # https://github.com/bjodah/chempy/pull/86#issuecomment-375421609
balance_stoichiometry(
{"C21H36N7O16P3S", "C3H4O3"}, {"H2O", "C5H8O3", "C24H38N7O18P3S"}
)
@requires("sympy", "pulp")
def test_balance_stoichiometry__very_underdetermined():
r3 = set("O2 Fe Al Cr".split())
p3 = set("FeO Fe2O3 Fe3O4 Al2O3 Cr2O3 CrO3".split())
bal3 = balance_stoichiometry(r3, p3, underdetermined=None)
ref3 = {"Fe": 7, "Al": 2, "Cr": 3, "O2": 9}, {k: 2 if k == "FeO" else 1 for k in p3}
substances = {k: Substance.from_formula(k) for k in r3 | p3}
assert all(viol == 0 for viol in Reaction(*ref3).composition_violation(substances))
assert sum(bal3[0].values()) + sum(bal3[1].values()) <= sum(ref3[0].values()) + sum(
ref3[1].values()
)
assert bal3 == ref3
@requires("sympy", "pulp")
def test_balance_stoichiometry__underdetermined__canoncial():
# This tests for canonical representation of the underdetermined system
# where all coefficients are integer and >= 1. It is however of limited
# practical use (and hence marked ``xfail``) since underdetermined systems
# have infinite number of solutions. It should however be possible to rewrite
# the logic so that such canonical results are returned from balance_stoichiometry
r2 = {"O2", "O3", "C", "NO", "N2O", "NO2", "N2O4"}
p2 = {"CO", "CO2", "N2"}
bal2 = balance_stoichiometry(r2, p2, underdetermined=None)
ref2 = (
{"O2": 1, "O3": 1, "C": 7, "NO": 1, "N2O": 1, "NO2": 1, "N2O4": 1},
{"CO": 1, "CO2": 6, "N2": 3},
)
substances = {k: Substance.from_formula(k) for k in r2 | p2}
assert all(viol == 0 for viol in Reaction(*ref2).composition_violation(substances))
assert sum(bal2[0].values()) + sum(bal2[1].values()) <= sum(ref2[0].values()) + sum(
ref2[1].values()
)
assert bal2 == ref2
@requires("sympy", "pulp")
def test_balance_stoichiometry__substances__underdetermined():
substances = {
s.name: s
for s in [
Substance("eggs_6pack", composition=dict(eggs=6)),
Substance("milk_carton", composition=dict(cups_of_milk=4)),
Substance("flour_bag", composition=dict(spoons_of_flour=30)),
Substance(
"pancake", composition=dict(eggs=1, cups_of_milk=1, spoons_of_flour=2)
),
Substance(
"waffle", composition=dict(eggs=2, cups_of_milk=2, spoons_of_flour=3)
),
]
}
ur1 = {"eggs_6pack", "milk_carton", "flour_bag"}
up1 = {"pancake", "waffle"}
br1, bp1 = balance_stoichiometry(
ur1, up1, substances=substances, underdetermined=None
)
ref_r1 = {"eggs_6pack": 6, "flour_bag": 2, "milk_carton": 9}
ref_p1 = {"pancake": 12, "waffle": 12}
assert all(
viol == 0 for viol in Reaction(ref_r1, ref_p1).composition_violation(substances)
)
assert all(v > 0 for v in br1.values()) and all(v > 0 for v in bp1.values())
assert bp1 == ref_p1
assert br1 == ref_r1
@requires("sympy")
def test_balance_stoichiometry__missing_product_atom():
with pytest.raises(ValueError): # No Al on product side
balance_stoichiometry({"C7H5(NO2)3", "Al", "NH4NO3"}, {"CO", "H2O", "N2"})
@requires("sympy")
def test_balance_stoichiometry__duplicates():
cases = """
C + CO + CO2 -> C + CO # suggested solution: C + CO2 -> 2 CO
C + CO + CO2 -> C + CO2 # suggested solution: 2 CO -> C + CO2
C + CO + CO2 -> CO + CO2 # suggested solution: C + CO2 -> 2 CO
C + CO -> C + CO + CO2 # suggested solution: 2 CO -> C + CO2
C + CO2 -> C + CO + CO2 # suggested solution: C + CO2 -> 2 CO
CO + CO2 -> C + CO + CO2 # suggested solution: 2 CO -> C + CO2
"""
for prob, sol in [line.split("#") for line in cases.strip().splitlines()]:
tst_r = Reaction.from_string(prob)
ref_r = Reaction.from_string(sol.split(":")[1])
tst_bal = balance_stoichiometry(
tst_r.reac, tst_r.prod, allow_duplicates=True, underdetermined=None
)
assert Reaction(*tst_bal) == ref_r
with pytest.raises(ValueError):
balance_stoichiometry(
{"C", "CO", "CO2"},
{"C", "CO", "CO2"},
allow_duplicates=True,
underdetermined=None,
)
gh120 = {"H4P2O7", "HPO3", "H2O"}, {"H4P2O7", "HPO3"}
bal120 = balance_stoichiometry(*gh120, allow_duplicates=True, underdetermined=None)
assert bal120 == ({"HPO3": 2, "H2O": 1}, {"H4P2O7": 1})
with pytest.raises(ValueError):
balance_stoichiometry(*gh120)
# https://github.com/bjodah/chempy/issues/120#issuecomment-434453703
bal_Mn = balance_stoichiometry(
{"H2O2", "Mn1", "H1"},
{"Mn1", "H2O1"},
allow_duplicates=True,
underdetermined=None,
)
assert bal_Mn == ({"H2O2": 1, "H1": 2}, {"H2O1": 2})
bal_Mn_COx = balance_stoichiometry(
{"C", "CO", "CO2", "Mn"},
{"C", "CO2", "Mn"},
allow_duplicates=True,
underdetermined=None,
)
assert bal_Mn_COx == ({"CO": 2}, {"C": 1, "CO2": 1})