Cameo Notebooks

Jupyter notebooks for the cameo (computer aided metabolic engineering and optimization of cell factories) software.

##Dev

Please install the following commit hook before working on the notebooks.

ln -s ../../pre-commit.sh .git/hooks/pre-commit

If you want to use util/run_notebook.py you need to install runipy first.

Name		Name	Last commit message	Last commit date
Latest commit History 117 Commits
Advanced-SynBio-for-Cell-Factories-Course		Advanced-SynBio-for-Cell-Factories-Course
binder		binder
data		data
images		images
other		other
util		util
.gitignore		.gitignore
.travis.yml		.travis.yml
01-quick-start.ipynb		01-quick-start.ipynb
02-import-models.ipynb		02-import-models.ipynb
03-simulate-models.ipynb		03-simulate-models.ipynb
04-analyze-models.ipynb		04-analyze-models.ipynb
05-predict-gene-knockout-strategies.ipynb		05-predict-gene-knockout-strategies.ipynb
06-predict-gene-modulation-targets.ipynb		06-predict-gene-modulation-targets.ipynb
07-predict-heterologous-pathways.ipynb		07-predict-heterologous-pathways.ipynb
08-high-level-API.ipynb		08-high-level-API.ipynb
LICENSE		LICENSE
README.md		README.md
index.ipynb		index.ipynb
test_notebooks.sh		test_notebooks.sh

biosustain/cameo-notebooks