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trouble in Azure DevOps test #47547
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Can you add |
I didn't download big data file in the test. And this PR have been completed successfully in the previous PR. |
I am experiencing the same thing with #47498 , and this has also been an issue continuously with RepeatMasker and RepeatModeler too |
Did anyone of you test |
yes, added in the build script, is it worth adding to the test as well? |
You can help yourself by adding more E.g. I would bet on https://github.com/bioconda/bioconda-recipes/pull/47498/files#diff-d357f966c7237a539f146074ad4c151fc5fcc6e2514524512aea9a92b6bd692dR20. Here you clone a Git repository. I am pretty sure you don't need all its history, so you can use Once you are ready with it you can delete the local copy of this repo, at line https://github.com/bioconda/bioconda-recipes/pull/47498/files#diff-d357f966c7237a539f146074ad4c151fc5fcc6e2514524512aea9a92b6bd692dR24 |
Great thanks, I've made those changes. I do wonder if this is an issue of RepeatMasker and RepeatModeler dependencies though, as RepeatMasker requires a relatively large database, and the error seems to arise after pulling the container from quay.io. RepeatModeler sources the LTRretriever databases as far as I know - this was also not an issue prior to a small update to the meta.yaml - has something changed recently in the DevOps system?
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I am not aware of any changes in the AzureCI config, but there might be something ... You can compare the contents of https://anaconda.org/bioconda/earlgrey/4.1.1/download/linux-64/earlgrey-4.1.1-h4ac6f70_0.tar.bz2 > info/about.json against the build logs and see whether something big changed between the builds |
Great, thanks for the information! I'll look into this and see if I can figure something out to successfully merge into Bioconda |
Have made the suggested changes and still running into the same issues. Not sure of a way around this to get the new version of the package into bioconda. Currently hosting on my own conda channel in the interim. https://dev.azure.com/bioconda/bioconda-recipes/_build/results?buildId=57459&view=results |
Sorry for the late reply. I have test 'df -h' in the test scripts, and found that the disk space occupied reached 97% after the build was completed. Which seems to be wired because the packages used in this build shouldn't occupie so much space. |
I have been experiencing this error continuously during the automatic testing process since submitting the update, but I have not been able to find the cause. It seems that there is an issue with the azure pipelines? It showed "[Errno 28] No space left on device" when TEST START after BUILD SUCCESS
Here is the link to the test in Azure DevOps https://dev.azure.com/bioconda/bioconda-recipes/_build/results?buildId=57320&view=logs&j=e14e69ff-a0ae-55c4-b71d-229b239cfb2f&t=4dddc55b-10bc-50fc-ac68-7ff899b7a030&l=2079
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