implement stable views for common uses (particularly hgvs)

[reece]

Originally reported by Reece Hart (Bitbucket: reece, GitHub: reece) in biocommons/uta #155
Migrated by bitbucket-issue-migration on 2016-09-09 15:15:07

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The goal is a minimal api via views for the purposes of providing data to hgvs. At the same time, consider whether a schema overhaul is warranted.

areas:
gene info: gene, aliases, description
sequence info:
transcript: ac, cds_se, exons_se
alignment: tx_ac, alt_ac, strand, method, exons, bounds, cigars
aligned exons: tx_ac,alt_ac,strand,method,ord,cigar,sequences

How to handle multiple alignments of tx to alt sequence?
Rel: multiple alignments to multiple alts (e.g., PAR and paralogs)

Links

• imported from: CORE-155 (Invitae access required)