Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

XML contains HPM that are not shown in the prior window #1062

Open
Serebix opened this issue Jun 7, 2019 · 0 comments
Open

XML contains HPM that are not shown in the prior window #1062

Serebix opened this issue Jun 7, 2019 · 0 comments

Comments

@Serebix
Copy link

Serebix commented Jun 7, 2019

Hi all,
I encountered another problem with the generation of XML containing HPMs.
When you generate multiple XML files (with different parameters) from the same Beauti instance, old HPM are carried over.
To be clear:
I linked the *.rates in the prior window into a hierarchical model.
Generate the XML file
Changed in the "Site" tab the "Partition into codon positions" into 2 partitions (Codon 1+2 and 3)
Linked the new CP1+2.rates into one HPM and CP3.rates into another.
Generate the new XML file
Upon checking, the second XML file still contains the HPM with the unpartioned condon.

A new BEAUti tab were you can check all models that will be generated would be nice to have a better overview over the XML (or possible mistakes in the generation of such).

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

No branches or pull requests

2 participants