{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":603169420,"defaultBranch":"main","name":"bactopia-py","ownerLogin":"bactopia","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2023-02-17T19:05:11.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/49879847?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1714494040.0","currentOid":""},"activityList":{"items":[{"before":"36e9b13190fd6feb79e0590d69d61652eecba237","after":"b8a9883d78bc4930b13ced232898b074b07a2784","ref":"refs/heads/main","pushedAt":"2024-04-30T16:18:48.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpetit3","name":"Robert A. Petit III","path":"/rpetit3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5334269?s=80&v=4"},"commit":{"message":"fix annotation and adjust logging level of a few messages","shortMessageHtmlLink":"fix annotation and adjust logging level of a few messages"}},{"before":"c4b68df2d814ad045a5982019afda8022f234d9b","after":"36e9b13190fd6feb79e0590d69d61652eecba237","ref":"refs/heads/main","pushedAt":"2024-04-30T15:58:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpetit3","name":"Robert A. Petit III","path":"/rpetit3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5334269?s=80&v=4"},"commit":{"message":"remove extra parameter in parse annotation","shortMessageHtmlLink":"remove extra parameter in parse annotation"}},{"before":"29be5a83c3c58f2f008fe317f6396784a18605af","after":"c4b68df2d814ad045a5982019afda8022f234d9b","ref":"refs/heads/main","pushedAt":"2024-04-30T15:56:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpetit3","name":"Robert A. Petit III","path":"/rpetit3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5334269?s=80&v=4"},"commit":{"message":"add support for bakta annotations in the summary","shortMessageHtmlLink":"add support for bakta annotations in the summary"}},{"before":"953267027186a6275204b7537290bc854d580969","after":"29be5a83c3c58f2f008fe317f6396784a18605af","ref":"refs/heads/main","pushedAt":"2024-04-30T15:36:10.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"rpetit3","name":"Robert A. Petit III","path":"/rpetit3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5334269?s=80&v=4"},"commit":{"message":"Merge pull request #2 from nickjhathaway/hotfix/atb_formatter\n\nadded ability to specify the assembly extension and allowing .gz files;","shortMessageHtmlLink":"Merge pull request #2 from nickjhathaway/hotfix/atb_formatter"}},{"before":"64a894f64ed22a0c47e374536c4fb3a7c5d986bc","after":"953267027186a6275204b7537290bc854d580969","ref":"refs/heads/main","pushedAt":"2024-04-25T18:33:15.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpetit3","name":"Robert A. Petit III","path":"/rpetit3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5334269?s=80&v=4"},"commit":{"message":"update changlog","shortMessageHtmlLink":"update changlog"}},{"before":"f4776c1265fb22e9cd7f958bd4b3ef3f2449c893","after":"64a894f64ed22a0c47e374536c4fb3a7c5d986bc","ref":"refs/heads/main","pushedAt":"2024-04-25T18:27:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpetit3","name":"Robert A. Petit III","path":"/rpetit3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5334269?s=80&v=4"},"commit":{"message":"update release to no longer use API key","shortMessageHtmlLink":"update release to no longer use API key"}},{"before":"6b6277445d24d1643289c9bf1e609e6c0c28fdc0","after":"f4776c1265fb22e9cd7f958bd4b3ef3f2449c893","ref":"refs/heads/main","pushedAt":"2024-04-25T16:58:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpetit3","name":"Robert A. Petit III","path":"/rpetit3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5334269?s=80&v=4"},"commit":{"message":"rework amrfinder logic for latest bactopia release","shortMessageHtmlLink":"rework amrfinder logic for latest bactopia release"}},{"before":"8ff2267a5cd7e19aa3ea2debcec452e3f6221798","after":"6b6277445d24d1643289c9bf1e609e6c0c28fdc0","ref":"refs/heads/main","pushedAt":"2024-03-22T21:10:33.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpetit3","name":"Robert A. Petit III","path":"/rpetit3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5334269?s=80&v=4"},"commit":{"message":"forgot to add output","shortMessageHtmlLink":"forgot to add output"}},{"before":"59106ae637fefb8e8f69dbc3d78452067430ce61","after":"8ff2267a5cd7e19aa3ea2debcec452e3f6221798","ref":"refs/heads/main","pushedAt":"2024-03-22T20:52:20.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpetit3","name":"Robert A. Petit III","path":"/rpetit3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5334269?s=80&v=4"},"commit":{"message":"fix broken link","shortMessageHtmlLink":"fix broken link"}},{"before":"3f0c46cb5a0ab0435460716994ff05cd7acf804e","after":"59106ae637fefb8e8f69dbc3d78452067430ce61","ref":"refs/heads/main","pushedAt":"2024-03-22T20:45:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpetit3","name":"Robert A. Petit III","path":"/rpetit3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5334269?s=80&v=4"},"commit":{"message":"add all the bacteria formatter","shortMessageHtmlLink":"add all the bacteria formatter"}},{"before":"2dacb6a163d35a4b11bbf7744228c078ddaf66ba","after":"3f0c46cb5a0ab0435460716994ff05cd7acf804e","ref":"refs/heads/main","pushedAt":"2023-09-07T00:01:05.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpetit3","name":"Robert A. Petit III","path":"/rpetit3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5334269?s=80&v=4"},"commit":{"message":"convert Path to string for prefix","shortMessageHtmlLink":"convert Path to string for prefix"}},{"before":"1c8d4a99da12c74c5c3d8dd722378ef77188b174","after":"2dacb6a163d35a4b11bbf7744228c078ddaf66ba","ref":"refs/heads/main","pushedAt":"2023-09-03T18:37:03.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpetit3","name":"Robert A. Petit III","path":"/rpetit3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5334269?s=80&v=4"},"commit":{"message":"add header to accessions, add hybrid and short-polish","shortMessageHtmlLink":"add header to accessions, add hybrid and short-polish"}},{"before":"493479d61d30d287f4e593a185091df5ea2bef7e","after":"1c8d4a99da12c74c5c3d8dd722378ef77188b174","ref":"refs/heads/main","pushedAt":"2023-08-21T15:52:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpetit3","name":"Robert A. Petit III","path":"/rpetit3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5334269?s=80&v=4"},"commit":{"message":"fix ValueError: No objects to concatenate in summary","shortMessageHtmlLink":"fix ValueError: No objects to concatenate in summary"}},{"before":"2e892a854124c849fcbabaea7d5a102f5c5b2f24","after":"493479d61d30d287f4e593a185091df5ea2bef7e","ref":"refs/heads/main","pushedAt":"2023-08-07T19:49:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpetit3","name":"Robert A. Petit III","path":"/rpetit3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5334269?s=80&v=4"},"commit":{"message":"use logging for debug print","shortMessageHtmlLink":"use logging for debug print"}},{"before":"024cffb90e815f81986272ae1c83d16182397407","after":"2e892a854124c849fcbabaea7d5a102f5c5b2f24","ref":"refs/heads/main","pushedAt":"2023-08-06T22:47:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpetit3","name":"Robert A. Petit III","path":"/rpetit3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5334269?s=80&v=4"},"commit":{"message":"bump to v1.0.5","shortMessageHtmlLink":"bump to v1.0.5"}},{"before":"9cfa947f1938c0165c96ea8c81c73b3974f217d0","after":"024cffb90e815f81986272ae1c83d16182397407","ref":"refs/heads/main","pushedAt":"2023-08-06T22:45:56.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpetit3","name":"Robert A. Petit III","path":"/rpetit3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5334269?s=80&v=4"},"commit":{"message":"include prokka and bakta for builds","shortMessageHtmlLink":"include prokka and bakta for builds"}},{"before":"1eeb001480b20e288a13fe74ed01670213fde589","after":"9cfa947f1938c0165c96ea8c81c73b3974f217d0","ref":"refs/heads/main","pushedAt":"2023-07-15T04:24:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpetit3","name":"Robert A. Petit III","path":"/rpetit3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5334269?s=80&v=4"},"commit":{"message":"check if required files exist","shortMessageHtmlLink":"check if required files exist"}},{"before":"533867e626dcc8e0f2739e8238cff0bd59d3bc47","after":"1eeb001480b20e288a13fe74ed01670213fde589","ref":"refs/heads/main","pushedAt":"2023-07-06T22:33:45.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpetit3","name":"Robert A. Petit III","path":"/rpetit3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5334269?s=80&v=4"},"commit":{"message":"add script to check if newer version of tools are available","shortMessageHtmlLink":"add script to check if newer version of tools are available"}},{"before":"39e9598d0921144896756a067bb129c70c48d612","after":"533867e626dcc8e0f2739e8238cff0bd59d3bc47","ref":"refs/heads/main","pushedAt":"2023-07-01T00:22:42.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpetit3","name":"Robert A. Petit III","path":"/rpetit3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5334269?s=80&v=4"},"commit":{"message":"Update CHANGELOG.md","shortMessageHtmlLink":"Update CHANGELOG.md"}},{"before":"4b48572cdf0d013bb819ac0b0a9e35ad1d30211f","after":"39e9598d0921144896756a067bb129c70c48d612","ref":"refs/heads/main","pushedAt":"2023-07-01T00:21:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpetit3","name":"Robert A. Petit III","path":"/rpetit3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5334269?s=80&v=4"},"commit":{"message":"adjust bactopia-summary for new output structure","shortMessageHtmlLink":"adjust bactopia-summary for new output structure"}},{"before":"90c83c4bb0ae3fa6561f058e6b361f99f29d4090","after":"4b48572cdf0d013bb819ac0b0a9e35ad1d30211f","ref":"refs/heads/main","pushedAt":"2023-05-31T04:37:31.416Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpetit3","name":"Robert A. Petit III","path":"/rpetit3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5334269?s=80&v=4"},"commit":{"message":"fix bactopia search querying with missing fields","shortMessageHtmlLink":"fix bactopia search querying with missing fields"}},{"before":"b2494a04745bd9e93807b511a427338e79909d19","after":"90c83c4bb0ae3fa6561f058e6b361f99f29d4090","ref":"refs/heads/main","pushedAt":"2023-04-25T18:02:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpetit3","name":"Robert A. Petit III","path":"/rpetit3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5334269?s=80&v=4"},"commit":{"message":"consistenly use bactopia-path across subcommands","shortMessageHtmlLink":"consistenly use bactopia-path across subcommands"}},{"before":"a1329ad16da560aeb1cc8df768f4946f295734af","after":"b2494a04745bd9e93807b511a427338e79909d19","ref":"refs/heads/main","pushedAt":"2023-04-25T17:57:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpetit3","name":"Robert A. Petit III","path":"/rpetit3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5334269?s=80&v=4"},"commit":{"message":"update readme","shortMessageHtmlLink":"update readme"}},{"before":"21558fe0392acad8d63c5886fd3d961f1e6d2621","after":"a1329ad16da560aeb1cc8df768f4946f295734af","ref":"refs/heads/main","pushedAt":"2023-04-25T17:52:18.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpetit3","name":"Robert A. Petit III","path":"/rpetit3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5334269?s=80&v=4"},"commit":{"message":"add bactopia datasets command to download datasets outside of Nextflow","shortMessageHtmlLink":"add bactopia datasets command to download datasets outside of Nextflow"}},{"before":"f43fbc67e2660d57e0b4b02e87bc0c2fde34d112","after":"21558fe0392acad8d63c5886fd3d961f1e6d2621","ref":"refs/heads/main","pushedAt":"2023-04-06T01:17:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpetit3","name":"Robert A. Petit III","path":"/rpetit3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5334269?s=80&v=4"},"commit":{"message":"fix parameter conflict with bactopia pipeline","shortMessageHtmlLink":"fix parameter conflict with bactopia pipeline"}},{"before":"36c96f5beb807babb4d41bad4e2253d62e03668a","after":"f43fbc67e2660d57e0b4b02e87bc0c2fde34d112","ref":"refs/heads/main","pushedAt":"2023-03-09T18:58:51.030Z","pushType":"push","commitsCount":1,"pusher":{"login":"rpetit3","name":"Robert A. Petit III","path":"/rpetit3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5334269?s=80&v=4"},"commit":{"message":"tweak download command","shortMessageHtmlLink":"tweak download command"}}],"hasNextPage":false,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEPjYsRAA","startCursor":null,"endCursor":null}},"title":"Activity ยท bactopia/bactopia-py"}