Zaydman_et_al

Supplemental code (matlab scripts) for Zaydman et al, 2020. To run supplemental code on latest version of Matlab, see 'Supplemental_Code_9_23_2020.m'.

Name		Name	Last commit message	Last commit date
Latest commit History 18 Commits
Benchmarks.mat		Benchmarks.mat
DOGG.mat		DOGG.mat
Ecoli_metadata.txt		Ecoli_metadata.txt
GeneratePhylogenyBenchmarks.m		GeneratePhylogenyBenchmarks.m
Nonstandard_Colormaps.m		Nonstandard_Colormaps.m
PhylogenyBenchmarks.mat		PhylogenyBenchmarks.mat
Proteomes.mat		Proteomes.mat
README.md		README.md
SCALES_V2.m		SCALES_V2.m
Supplemental_Code_9_23_2020.m		Supplemental_Code_9_23_2020.m
UP000000625_83333.fasta		UP000000625_83333.fasta
UP000000625_83333.fasta.maNog.emapper.annotations		UP000000625_83333.fasta.maNog.emapper.annotations
Zaydman_et_al_Sourcedatafiles.zip		Zaydman_et_al_Sourcedatafiles.zip
Zaydman_et_al_SupplementaryFiles.zip		Zaydman_et_al_SupplementaryFiles.zip
ZscoreMatrix.m		ZscoreMatrix.m
approxProteinProjections.m		approxProteinProjections.m
empirical_differential_MI.m		empirical_differential_MI.m
make_GoldStandardSet.m		make_GoldStandardSet.m
make_bootstrap.m		make_bootstrap.m
partition_GSPairs.m		partition_GSPairs.m
plotDOGGZOGG.m		plotDOGGZOGG.m
plotPPICorrelationsExample.m		plotPPICorrelationsExample.m
plotPPIMIExample.m		plotPPIMIExample.m
plotPowerLaw.m		plotPowerLaw.m
plotProteomeCorrelationsExample.m		plotProteomeCorrelationsExample.m
plotProteomeMIExample.m		plotProteomeMIExample.m
plotSVDSpectrum.m		plotSVDSpectrum.m
plotUSV.m		plotUSV.m
plot_MIWSCogg.m		plot_MIWSCogg.m
plot_ValidationSetCMs.m		plot_ValidationSetCMs.m
plot_thresholdedSpectralDepth.m		plot_thresholdedSpectralDepth.m
train_RFModels.m		train_RFModels.m

arjunsraman/Zaydman_et_al

Folders and files

Latest commit

History

Repository files navigation

Zaydman_et_al

About

Resources

Stars

Watchers

Forks

Languages