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[2024-03-22 13:07:16,218] [INFO] [real_accelerator.py:161:get_accelerator] Setting ds_accelerator to cuda (auto detect)
INFO:/software/sse/manual/OpenFold/2.0.0/openfold/utils/script_utils.py:Successfully loaded JAX parameters at openfold/resources/params/params_model_1.npz...
INFO:/software/sse/manual/OpenFold/2.0.0/run_pretrained_openfold.py:Using precomputed alignments for T1050 at /proj/nsc_testing/xuan/openfold_results_2.0.0/output/alignments...
Traceback (most recent call last):
File "/software/sse/manual/OpenFold/2.0.0/run_pretrained_openfold.py", line 470, in <module>
main(args)
File "/software/sse/manual/OpenFold/2.0.0/run_pretrained_openfold.py", line 279, in main
feature_dict = generate_feature_dict(
File "/software/sse/manual/OpenFold/2.0.0/run_pretrained_openfold.py", line 141, in generate_feature_dict
feature_dict = data_processor.process_fasta(
File "/software/sse/manual/OpenFold/2.0.0/openfold/data/data_pipeline.py", line 876, in process_fasta
template_features = make_template_features(
File "/software/sse/manual/OpenFold/2.0.0/openfold/data/data_pipeline.py", line 44, in make_template_features
templates_result = template_featurizer.get_templates(
File "/software/sse/manual/OpenFold/2.0.0/openfold/data/templates.py", line 1126, in get_templates
sorted(filtered, key=lambda x: x.sum_probs, reverse=True)
TypeError: '<' not supported between instances of 'NoneType' and 'NoneType'
Has anyone experienced a similar issue, or does anyone have suggestions on how I might resolve this? Any advice or guidance would be greatly appreciated.
Thank you for your time and help.
The text was updated successfully, but these errors were encountered:
Dear OpenFold community,
I was encountering an error when running inference using precomputed alignments.
I precomputed the alignments by:
I ran the inference by:
The error message was as follows.
Has anyone experienced a similar issue, or does anyone have suggestions on how I might resolve this? Any advice or guidance would be greatly appreciated.
Thank you for your time and help.
The text was updated successfully, but these errors were encountered: