explore-droid-csv.ipynb

{
 "cells": [
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Visualising DROID CSV\n",
    "=====================\n",
    "\n",
    "This is a quick experiment in visualising format results from DROID using a Jupyter Notebook.\n",
    "\n",
    "First we load in some example results...."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 13,
   "metadata": {},
   "outputs": [
    {
     "data": {
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       "      <th>ID</th>\n",
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       "      <th>LAST_MODIFIED</th>\n",
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       "      <th>PUID</th>\n",
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       "      <th>FORMAT_NAME</th>\n",
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       "      <td>apple-intermediate-codec.mov</td>\n",
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       "      <td>319539</td>\n",
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       "      <td>Neddy_Flyer_ft_HeatherRyan.jpg</td>\n",
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       "      <td>1620612</td>\n",
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       "      <td>Neddy_Flyer_HeatherRyan.pdf</td>\n",
       "      <td>Signature</td>\n",
       "      <td>Done</td>\n",
       "      <td>59106</td>\n",
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       "      <td>Neddy_Flyer_HeatherRyan.indd</td>\n",
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       "      <td>Neddy_Flyer_README_HeatherRyan.md.rtf</td>\n",
       "      <td>Signature</td>\n",
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       "      ID  PARENT_ID                                                URI  \\\n",
       "0      2          0  file:////10.1.4.222/gda/archives-sample-files/...   \n",
       "1      3          2  file:////10.1.4.222/gda/archives-sample-files/...   \n",
       "2      4          3  file:////10.1.4.222/gda/archives-sample-files/...   \n",
       "3      5          4  file:////10.1.4.222/gda/archives-sample-files/...   \n",
       "4      6          4  file:////10.1.4.222/gda/archives-sample-files/...   \n",
       "..   ...        ...                                                ...   \n",
       "394  396        395  file:////10.1.4.222/gda/archives-sample-files/...   \n",
       "395  397        396  file:////10.1.4.222/gda/archives-sample-files/...   \n",
       "396  398        396  file:////10.1.4.222/gda/archives-sample-files/...   \n",
       "397  399        396  file:////10.1.4.222/gda/archives-sample-files/...   \n",
       "398  400        396  file:////10.1.4.222/gda/archives-sample-files/...   \n",
       "\n",
       "                                             FILE_PATH  \\\n",
       "0    \\\\10.1.4.222\\gda\\archives-sample-files\\opf-for...   \n",
       "1    \\\\10.1.4.222\\gda\\archives-sample-files\\opf-for...   \n",
       "2    \\\\10.1.4.222\\gda\\archives-sample-files\\opf-for...   \n",
       "3    \\\\10.1.4.222\\gda\\archives-sample-files\\opf-for...   \n",
       "4    \\\\10.1.4.222\\gda\\archives-sample-files\\opf-for...   \n",
       "..                                                 ...   \n",
       "394  \\\\10.1.4.222\\gda\\archives-sample-files\\opf-for...   \n",
       "395  \\\\10.1.4.222\\gda\\archives-sample-files\\opf-for...   \n",
       "396  \\\\10.1.4.222\\gda\\archives-sample-files\\opf-for...   \n",
       "397  \\\\10.1.4.222\\gda\\archives-sample-files\\opf-for...   \n",
       "398  \\\\10.1.4.222\\gda\\archives-sample-files\\opf-for...   \n",
       "\n",
       "                                      NAME     METHOD STATUS     SIZE    TYPE  \\\n",
       "0                            format-corpus              Done           Folder   \n",
       "1                                    video              Done           Folder   \n",
       "2                                Quicktime              Done           Folder   \n",
       "3             apple-intermediate-codec.mov  Signature   Done   319539    File   \n",
       "4                            animation.mov  Signature   Done  1020209    File   \n",
       "..                                     ...        ...    ...      ...     ...   \n",
       "394                               InDesign              Done           Folder   \n",
       "395         Neddy_Flyer_ft_HeatherRyan.jpg  Signature   Done  1620612    File   \n",
       "396            Neddy_Flyer_HeatherRyan.pdf  Signature   Done    59106    File   \n",
       "397           Neddy_Flyer_HeatherRyan.indd  Signature   Done  1503232    File   \n",
       "398  Neddy_Flyer_README_HeatherRyan.md.rtf  Signature   Done     1210    File   \n",
       "\n",
       "      EXT        LAST_MODIFIED  EXTENSION_MISMATCH  \\\n",
       "0          2014-02-28T15:49:11               False   \n",
       "1          2014-02-28T15:48:47               False   \n",
       "2          2014-02-28T15:48:59               False   \n",
       "3     mov  2014-02-18T16:58:16               False   \n",
       "4     mov  2014-02-18T16:58:16               False   \n",
       "..    ...                  ...                 ...   \n",
       "394        2014-02-28T15:49:11               False   \n",
       "395   jpg  2014-02-18T16:58:08               False   \n",
       "396   pdf  2014-02-18T16:58:08               False   \n",
       "397  indd  2014-02-18T16:58:08               False   \n",
       "398   rtf  2014-02-18T16:58:08               False   \n",
       "\n",
       "                                    SHA1_HASH FORMAT_COUNT       PUID  \\\n",
       "0                                                                       \n",
       "1                                                                       \n",
       "2                                                                       \n",
       "3    d097cf36467373f52b974542d48bec134279fa3f            1  x-fmt/384   \n",
       "4    edb5226b963f449ce58054809149cb812bdf8c0a            1  x-fmt/384   \n",
       "..                                        ...          ...        ...   \n",
       "394                                                                     \n",
       "395  884de50cb1c052c0e10bef306850ee995d965175            1     fmt/41   \n",
       "396  9e19b76e8364c840945bc380ab5f98f00a23ab80            1     fmt/17   \n",
       "397  d9211fe38e79f34fb7a043fe34df59527fb6e179            1    fmt/196   \n",
       "398  3665b0c1457f996359939746752fe86f2025b68d            1     fmt/50   \n",
       "\n",
       "                     MIME_TYPE                                 FORMAT_NAME  \\\n",
       "0                                                                            \n",
       "1                                                                            \n",
       "2                                                                            \n",
       "3              video/quicktime                                   Quicktime   \n",
       "4              video/quicktime                                   Quicktime   \n",
       "..                         ...                                         ...   \n",
       "394                                                                          \n",
       "395                 image/jpeg                             Raw JPEG Stream   \n",
       "396            application/pdf  Acrobat PDF 1.3 - Portable Document Format   \n",
       "397                                                Adobe InDesign Document   \n",
       "398  application/rtf, text/rtf                            Rich Text Format   \n",
       "\n",
       "    FORMAT_VERSION  \n",
       "0                   \n",
       "1                   \n",
       "2                   \n",
       "3                   \n",
       "4                   \n",
       "..             ...  \n",
       "394                 \n",
       "395                 \n",
       "396            1.3  \n",
       "397             CS  \n",
       "398        1.5-1.6  \n",
       "\n",
       "[399 rows x 18 columns]"
      ]
     },
     "execution_count": 13,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "from io import StringIO\n",
    "import pandas as pd\n",
    "import requests\n",
    "\n",
    "url = 'https://raw.githubusercontent.com/exponential-decay/demystify/master/opf-test-corpus-test-output/opf-test-corpus-droid-analysis.csv'\n",
    "s=requests.get(url).text\n",
    "\n",
    "df=pd.read_csv(StringIO(s), keep_default_na=False)\n",
    "df"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Now we have the data, we can explore ways to visualise it.\n",
    "\n",
    "Here's a simple bar chart of all the different types and PUIDs..."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 22,
   "metadata": {},
   "outputs": [
    {
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\"\\\\\\\\10.1.4.222\\\\gda\\\\archives-sample-files\\\\opf-format-corpus\\\\format-corpus\\\\desktop-publishing\\\\InDesign\\\\Neddy_Flyer_HeatherRyan.pdf\", \"NAME\": \"Neddy_Flyer_HeatherRyan.pdf\", \"METHOD\": \"Signature\", \"STATUS\": \"Done\", \"SIZE\": \"59106\", \"TYPE\": \"File\", \"EXT\": \"pdf\", \"LAST_MODIFIED\": \"2014-02-18T16:58:08\", \"EXTENSION_MISMATCH\": false, \"SHA1_HASH\": \"9e19b76e8364c840945bc380ab5f98f00a23ab80\", \"FORMAT_COUNT\": \"1\", \"PUID\": \"fmt/17\", \"MIME_TYPE\": \"application/pdf\", \"FORMAT_NAME\": \"Acrobat PDF 1.3 - Portable Document Format\", \"FORMAT_VERSION\": \"1.3\"}, {\"ID\": 399, \"PARENT_ID\": 396, \"URI\": \"file:////10.1.4.222/gda/archives-sample-files/opf-format-corpus/format-corpus/desktop-publishing/InDesign/Neddy_Flyer_HeatherRyan.indd\", \"FILE_PATH\": \"\\\\\\\\10.1.4.222\\\\gda\\\\archives-sample-files\\\\opf-format-corpus\\\\format-corpus\\\\desktop-publishing\\\\InDesign\\\\Neddy_Flyer_HeatherRyan.indd\", \"NAME\": \"Neddy_Flyer_HeatherRyan.indd\", \"METHOD\": \"Signature\", \"STATUS\": \"Done\", \"SIZE\": \"1503232\", \"TYPE\": \"File\", \"EXT\": \"indd\", \"LAST_MODIFIED\": \"2014-02-18T16:58:08\", \"EXTENSION_MISMATCH\": false, \"SHA1_HASH\": \"d9211fe38e79f34fb7a043fe34df59527fb6e179\", \"FORMAT_COUNT\": \"1\", \"PUID\": \"fmt/196\", \"MIME_TYPE\": \"\", \"FORMAT_NAME\": \"Adobe InDesign Document\", \"FORMAT_VERSION\": \"CS\"}, {\"ID\": 400, \"PARENT_ID\": 396, \"URI\": \"file:////10.1.4.222/gda/archives-sample-files/opf-format-corpus/format-corpus/desktop-publishing/InDesign/Neddy_Flyer_README_HeatherRyan.md.rtf\", \"FILE_PATH\": \"\\\\\\\\10.1.4.222\\\\gda\\\\archives-sample-files\\\\opf-format-corpus\\\\format-corpus\\\\desktop-publishing\\\\InDesign\\\\Neddy_Flyer_README_HeatherRyan.md.rtf\", \"NAME\": \"Neddy_Flyer_README_HeatherRyan.md.rtf\", \"METHOD\": \"Signature\", \"STATUS\": \"Done\", \"SIZE\": \"1210\", \"TYPE\": \"File\", \"EXT\": \"rtf\", \"LAST_MODIFIED\": \"2014-02-18T16:58:08\", \"EXTENSION_MISMATCH\": false, \"SHA1_HASH\": \"3665b0c1457f996359939746752fe86f2025b68d\", \"FORMAT_COUNT\": \"1\", \"PUID\": \"fmt/50\", \"MIME_TYPE\": \"application/rtf, text/rtf\", \"FORMAT_NAME\": \"Rich Text Format\", \"FORMAT_VERSION\": \"1.5-1.6\"}]}}, {\"mode\": \"vega-lite\"});\n",
       "</script>"
      ],
      "text/plain": [
       "alt.Chart(...)"
      ]
     },
     "execution_count": 22,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "import altair as alt\n",
    "\n",
    "alt.Chart(df).mark_bar().encode(\n",
    "    x=alt.X('PUID', sort='-y'),\n",
    "    y='count()',\n",
    "    color='TYPE',\n",
    "    tooltip=['TYPE','PUID', 'FORMAT_NAME', 'FORMAT_VERSION', 'count()']\n",
    ").interactive()"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Alternatively, we can group together the different MIME types, and use the colours to show the various PUIDs associated with each..."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 31,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
       "\n",
       "<div id=\"altair-viz-e158f74ef6934d04904ca1ae98a12f00\"></div>\n",
       "<script type=\"text/javascript\">\n",
       "  (function(spec, embedOpt){\n",
       "    let outputDiv = document.currentScript.previousElementSibling;\n",
       "    if (outputDiv.id !== \"altair-viz-e158f74ef6934d04904ca1ae98a12f00\") {\n",
       "      outputDiv = document.getElementById(\"altair-viz-e158f74ef6934d04904ca1ae98a12f00\");\n",
       "    }\n",
       "    const paths = {\n",
       "      \"vega\": \"https://cdn.jsdelivr.net/npm//vega@5?noext\",\n",
       "      \"vega-lib\": \"https://cdn.jsdelivr.net/npm//vega-lib?noext\",\n",
       "      \"vega-lite\": \"https://cdn.jsdelivr.net/npm//vega-lite@4.8.1?noext\",\n",
       "      \"vega-embed\": \"https://cdn.jsdelivr.net/npm//vega-embed@6?noext\",\n",
       "    };\n",
       "\n",
       "    function loadScript(lib) {\n",
       "      return new Promise(function(resolve, reject) {\n",
       "        var s = document.createElement('script');\n",
       "        s.src = paths[lib];\n",
       "        s.async = true;\n",
       "        s.onload = () => resolve(paths[lib]);\n",
       "        s.onerror = () => reject(`Error loading script: ${paths[lib]}`);\n",
       "        document.getElementsByTagName(\"head\")[0].appendChild(s);\n",
       "      });\n",
       "    }\n",
       "\n",
       "    function showError(err) {\n",
       "      outputDiv.innerHTML = `<div class=\"error\" style=\"color:red;\">${err}</div>`;\n",
       "      throw err;\n",
       "    }\n",
       "\n",
       "    function displayChart(vegaEmbed) {\n",
       "      vegaEmbed(outputDiv, spec, embedOpt)\n",
       "        .catch(err => showError(`Javascript Error: ${err.message}<br>This usually means there's a typo in your chart specification. See the javascript console for the full traceback.`));\n",
       "    }\n",
       "\n",
       "    if(typeof define === \"function\" && define.amd) {\n",
       "      requirejs.config({paths});\n",
       "      require([\"vega-embed\"], displayChart, err => showError(`Error loading script: ${err.message}`));\n",
       "    } else if (typeof vegaEmbed === \"function\") {\n",
       "      displayChart(vegaEmbed);\n",
       "    } else {\n",
       "      loadScript(\"vega\")\n",
       "        .then(() => loadScript(\"vega-lite\"))\n",
       "        .then(() => loadScript(\"vega-embed\"))\n",
       "        .catch(showError)\n",
       "        .then(() => displayChart(vegaEmbed));\n",
       "    }\n",
       "  })({\"config\": {\"view\": {\"continuousWidth\": 400, \"continuousHeight\": 300}}, \"data\": {\"name\": \"data-ddd9b3fb090b13ac08a5c39eb08d878b\"}, \"mark\": \"bar\", \"encoding\": {\"color\": {\"type\": \"nominal\", \"field\": \"PUID\", \"legend\": null}, \"tooltip\": [{\"type\": \"nominal\", \"field\": \"TYPE\"}, {\"type\": \"nominal\", \"field\": \"MIME_TYPE\"}, {\"type\": \"nominal\", \"field\": \"PUID\"}, {\"type\": \"nominal\", \"field\": \"FORMAT_NAME\"}, {\"type\": \"nominal\", \"field\": \"FORMAT_VERSION\"}, {\"type\": \"quantitative\", \"aggregate\": \"count\"}], \"x\": {\"type\": \"nominal\", \"field\": \"MIME_TYPE\", \"sort\": \"-y\"}, \"y\": {\"type\": \"quantitative\", \"aggregate\": \"count\"}}, \"selection\": {\"selector023\": {\"type\": \"interval\", \"bind\": \"scales\", \"encodings\": [\"x\", \"y\"]}}, \"$schema\": \"https://vega.github.io/schema/vega-lite/v4.8.1.json\", \"datasets\": {\"data-ddd9b3fb090b13ac08a5c39eb08d878b\": [{\"ID\": 2, \"PARENT_ID\": 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