day 50 - game of life.ipynb

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    "import numpy as np\n",
    "from scipy.fftpack import fft2, ifft2\n",
    "from bokeh.plotting import figure, show, output_notebook\n",
    "from bokeh.io import push_notebook\n",
    "from time import sleep"
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   "source": [
    "## algorithm"
   ]
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   "source": [
    "def conway(size, prob=.5):\n",
    "    # initialize game\n",
    "    board = (np.random.rand(size, size) < prob).astype(int)\n",
    "\n",
    "    # kernel\n",
    "    kernel = np.zeros(board.shape)\n",
    "    kernel[sorted([0, 1, -1] * 3), [-1, 0, 1] * 3] = 1\n",
    "    kernel[0, 0] = 10\n",
    "    kernel = fft2(kernel)\n",
    "    \n",
    "    # update step\n",
    "    def _conway():\n",
    "        cell = ifft2(fft2(board) * kernel).real.round()\n",
    "        board[:] = (cell == 3) | (cell == 12) | (cell == 13)\n",
    "        return board\n",
    "        \n",
    "    return _conway"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## plotting"
   ]
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   "source": [
    "def animate(game, frames=30):\n",
    "    frame = game()\n",
    "    \n",
    "    output_notebook()\n",
    "    \n",
    "    plot = figure(x_range=(0, 1), y_range=(0, 1), \n",
    "                  plot_width=frame.shape[1] * 5, \n",
    "                  plot_height=frame.shape[0] * 5)\n",
    "    plot.axis.visible = False\n",
    "    image = plot.image([frame], x=0, y=0, dw=1, dh=1)\n",
    "\n",
    "    handle = show(plot, notebook_handle=True)\n",
    "    \n",
    "    for i in range(frames):\n",
    "        image.data_source.data['image'] = [game()]\n",
    "        push_notebook()\n",
    "        sleep(.05)"
   ]
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   "source": [
    "## pulsar"
   ]
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Application\",\"version\":\"0.12.4\"}};\n",
       "            var render_items = [{\"docid\":\"d890cd10-37b5-4699-8257-6edd6123aa11\",\"elementid\":\"e11fdb0e-5f4d-4896-b32e-c6b33c9b4d2d\",\"modelid\":\"a8c33a56-d8f8-4d5c-a690-b3d3babb4319\",\"notebook_comms_target\":\"9e46cfcb-cdd2-4c6f-80cc-bfcd3daad915\"}];\n",
       "            \n",
       "            Bokeh.embed.embed_items(docs_json, render_items);\n",
       "          };\n",
       "          if (document.readyState != \"loading\") fn();\n",
       "          else document.addEventListener(\"DOMContentLoaded\", fn);\n",
       "        })();\n",
       "      },\n",
       "      function(Bokeh) {\n",
       "      }\n",
       "    ];\n",
       "  \n",
       "    function run_inline_js() {\n",
       "      \n",
       "      if ((window.Bokeh !== undefined) || (force === true)) {\n",
       "        for (var i = 0; i < inline_js.length; i++) {\n",
       "          inline_js[i](window.Bokeh);\n",
       "        }if (force === true) {\n",
       "          display_loaded();\n",
       "        }} else if (Date.now() < window._bokeh_timeout) {\n",
       "        setTimeout(run_inline_js, 100);\n",
       "      } else if (!window._bokeh_failed_load) {\n",
       "        console.log(\"Bokeh: BokehJS failed to load within specified timeout.\");\n",
       "        window._bokeh_failed_load = true;\n",
       "      } else if (force !== true) {\n",
       "        var cell = $(document.getElementById(\"e11fdb0e-5f4d-4896-b32e-c6b33c9b4d2d\")).parents('.cell').data().cell;\n",
       "        cell.output_area.append_execute_result(NB_LOAD_WARNING)\n",
       "      }\n",
       "  \n",
       "    }\n",
       "  \n",
       "    if (window._bokeh_is_loading === 0) {\n",
       "      console.log(\"Bokeh: BokehJS loaded, going straight to plotting\");\n",
       "      run_inline_js();\n",
       "    } else {\n",
       "      load_libs(js_urls, function() {\n",
       "        console.log(\"Bokeh: BokehJS plotting callback run at\", now());\n",
       "        run_inline_js();\n",
       "      });\n",
       "    }\n",
       "  }(this));\n",
       "</script>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "game = conway(50, .0)\n",
    "board = game()\n",
    "\n",
    "# pulsar\n",
    "index = [4, 5, 6, 10, 11, 12]\n",
    "board[2, index] = 1\n",
    "board[7, index] = 1\n",
    "board[9, index] = 1\n",
    "board[14, index] = 1\n",
    "board[index, 2] = 1\n",
    "board[index, 7] = 1\n",
    "board[index, 9] = 1\n",
    "board[index, 14] = 1\n",
    "\n",
    "# glider\n",
    "board[[30, 30, 30, 31, 32], [30, 31, 32, 30, 31]] = 1\n",
    "\n",
    "# animate\n",
    "animate(game, frames=200)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## random game"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/html": [
       "\n",
       "    <div class=\"bk-root\">\n",
       "        <a href=\"http://bokeh.pydata.org\" target=\"_blank\" class=\"bk-logo bk-logo-small bk-logo-notebook\"></a>\n",
       "        <span id=\"f3c96d14-2c63-4627-8a44-35e1e1a1f2d0\">Loading BokehJS ...</span>\n",
       "    </div>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    },
    {
     "data": {
      "application/javascript": [
       "\n",
       "(function(global) {\n",
       "  function now() {\n",
       "    return new Date();\n",
       "  }\n",
       "\n",
       "  var force = true;\n",
       "\n",
       "  if (typeof (window._bokeh_onload_callbacks) === \"undefined\" || force === true) {\n",
       "    window._bokeh_onload_callbacks = [];\n",
       "    window._bokeh_is_loading = undefined;\n",
       "  }\n",
       "\n",
       "\n",
       "  \n",
       "  if (typeof (window._bokeh_timeout) === \"undefined\" || force === true) {\n",
       "    window._bokeh_timeout = Date.now() + 5000;\n",
       "    window._bokeh_failed_load = false;\n",
       "  }\n",
       "\n",
       "  var NB_LOAD_WARNING = {'data': {'text/html':\n",
       "     \"<div style='background-color: #fdd'>\\n\"+\n",
       "     \"<p>\\n\"+\n",
       "     \"BokehJS does not appear to have successfully loaded. If loading BokehJS from CDN, this \\n\"+\n",
       "     \"may be due to a slow or bad network connection. Possible fixes:\\n\"+\n",
       "     \"</p>\\n\"+\n",
       "     \"<ul>\\n\"+\n",
       "     \"<li>re-rerun `output_notebook()` to attempt to load from CDN again, or</li>\\n\"+\n",
       "     \"<li>use INLINE resources instead, as so:</li>\\n\"+\n",
       "     \"</ul>\\n\"+\n",
       "     \"<code>\\n\"+\n",
       "     \"from bokeh.resources import INLINE\\n\"+\n",
       "     \"output_notebook(resources=INLINE)\\n\"+\n",
       "     \"</code>\\n\"+\n",
       "     \"</div>\"}};\n",
       "\n",
       "  function display_loaded() {\n",
       "    if (window.Bokeh !== undefined) {\n",
       "      document.getElementById(\"f3c96d14-2c63-4627-8a44-35e1e1a1f2d0\").textContent = \"BokehJS successfully loaded.\";\n",
       "    } else if (Date.now() < window._bokeh_timeout) {\n",
       "      setTimeout(display_loaded, 100)\n",
       "    }\n",
       "  }\n",
       "\n",
       "  function run_callbacks() {\n",
       "    window._bokeh_onload_callbacks.forEach(function(callback) { callback() });\n",
       "    delete window._bokeh_onload_callbacks\n",
       "    console.info(\"Bokeh: all callbacks have finished\");\n",
       "  }\n",
       "\n",
       "  function load_libs(js_urls, callback) {\n",
       "    window._bokeh_onload_callbacks.push(callback);\n",
       "    if (window._bokeh_is_loading > 0) {\n",
       "      console.log(\"Bokeh: BokehJS is being loaded, scheduling callback at\", now());\n",
       "      return null;\n",
       "    }\n",
       "    if (js_urls == null || js_urls.length === 0) {\n",
       "      run_callbacks();\n",
       "      return null;\n",
       "    }\n",
       "    console.log(\"Bokeh: BokehJS not loaded, scheduling load and callback at\", now());\n",
       "    window._bokeh_is_loading = js_urls.length;\n",
       "    for (var i = 0; i < js_urls.length; i++) {\n",
       "      var url = js_urls[i];\n",
       "      var s = document.createElement('script');\n",
       "      s.src = url;\n",
       "      s.async = false;\n",
       "      s.onreadystatechange = s.onload = function() {\n",
       "        window._bokeh_is_loading--;\n",
       "        if (window._bokeh_is_loading === 0) {\n",
       "          console.log(\"Bokeh: all BokehJS libraries loaded\");\n",
       "          run_callbacks()\n",
       "        }\n",
       "      };\n",
       "      s.onerror = function() {\n",
       "        console.warn(\"failed to load library \" + url);\n",
       "      };\n",
       "      console.log(\"Bokeh: injecting script tag for BokehJS library: \", url);\n",
       "      document.getElementsByTagName(\"head\")[0].appendChild(s);\n",
       "    }\n",
       "  };var element = document.getElementById(\"f3c96d14-2c63-4627-8a44-35e1e1a1f2d0\");\n",
       "  if (element == null) {\n",
       "    console.log(\"Bokeh: ERROR: autoload.js configured with elementid 'f3c96d14-2c63-4627-8a44-35e1e1a1f2d0' but no matching script tag was found. \")\n",
       "    return false;\n",
       "  }\n",
       "\n",
       "  var js_urls = [\"https://cdn.pydata.org/bokeh/release/bokeh-0.12.4.min.js\", \"https://cdn.pydata.org/bokeh/release/bokeh-widgets-0.12.4.min.js\"];\n",
       "\n",
       "  var inline_js = [\n",
       "    function(Bokeh) {\n",
       "      Bokeh.set_log_level(\"info\");\n",
       "    },\n",
       "    \n",
       "    function(Bokeh) {\n",
       "      \n",
       "      document.getElementById(\"f3c96d14-2c63-4627-8a44-35e1e1a1f2d0\").textContent = \"BokehJS is loading...\";\n",
       "    },\n",
       "    function(Bokeh) {\n",
       "      console.log(\"Bokeh: injecting CSS: https://cdn.pydata.org/bokeh/release/bokeh-0.12.4.min.css\");\n",
       "      Bokeh.embed.inject_css(\"https://cdn.pydata.org/bokeh/release/bokeh-0.12.4.min.css\");\n",
       "      console.log(\"Bokeh: injecting CSS: https://cdn.pydata.org/bokeh/release/bokeh-widgets-0.12.4.min.css\");\n",
       "      Bokeh.embed.inject_css(\"https://cdn.pydata.org/bokeh/release/bokeh-widgets-0.12.4.min.css\");\n",
       "    }\n",
       "  ];\n",
       "\n",
       "  function run_inline_js() {\n",
       "    \n",
       "    if ((window.Bokeh !== undefined) || (force === true)) {\n",
       "      for (var i = 0; i < inline_js.length; i++) {\n",
       "        inline_js[i](window.Bokeh);\n",
       "      }if (force === true) {\n",
       "        display_loaded();\n",
       "      }} else if (Date.now() < window._bokeh_timeout) {\n",
       "      setTimeout(run_inline_js, 100);\n",
       "    } else if (!window._bokeh_failed_load) {\n",
       "      console.log(\"Bokeh: BokehJS failed to load within specified timeout.\");\n",
       "      window._bokeh_failed_load = true;\n",
       "    } else if (force !== true) {\n",
       "      var cell = $(document.getElementById(\"f3c96d14-2c63-4627-8a44-35e1e1a1f2d0\")).parents('.cell').data().cell;\n",
       "      cell.output_area.append_execute_result(NB_LOAD_WARNING)\n",
       "    }\n",
       "\n",
       "  }\n",
       "\n",
       "  if (window._bokeh_is_loading === 0) {\n",
       "    console.log(\"Bokeh: BokehJS loaded, going straight to plotting\");\n",
       "    run_inline_js();\n",
       "  } else {\n",
       "    load_libs(js_urls, function() {\n",
       "      console.log(\"Bokeh: BokehJS plotting callback run at\", now());\n",
       "      run_inline_js();\n",
       "    });\n",
       "  }\n",
       "}(this));"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    },
    {
     "data": {
      "text/html": [
       "\n",
       "\n",
       "    <div class=\"bk-root\">\n",
       "        <div class=\"bk-plotdiv\" id=\"64f1e7a9-9f30-47ee-9561-e21b3a2a9c08\"></div>\n",
       "    </div>\n",
       "<script type=\"text/javascript\">\n",
       "  \n",
       "  (function(global) {\n",
       "    function now() {\n",
       "      return new Date();\n",
       "    }\n",
       "  \n",
       "    var force = false;\n",
       "  \n",
       "    if (typeof (window._bokeh_onload_callbacks) === \"undefined\" || force === true) {\n",
       "      window._bokeh_onload_callbacks = [];\n",
       "      window._bokeh_is_loading = undefined;\n",
       "    }\n",
       "  \n",
       "  \n",
       "    \n",
       "    if (typeof (window._bokeh_timeout) === \"undefined\" || force === true) {\n",
       "      window._bokeh_timeout = Date.now() + 0;\n",
       "      window._bokeh_failed_load = false;\n",
       "    }\n",
       "  \n",
       "    var NB_LOAD_WARNING = {'data': {'text/html':\n",
       "       \"<div style='background-color: #fdd'>\\n\"+\n",
       "       \"<p>\\n\"+\n",
       "       \"BokehJS does not appear to have successfully loaded. If loading BokehJS from CDN, this \\n\"+\n",
       "       \"may be due to a slow or bad network connection. Possible fixes:\\n\"+\n",
       "       \"</p>\\n\"+\n",
       "       \"<ul>\\n\"+\n",
       "       \"<li>re-rerun `output_notebook()` to attempt to load from CDN again, or</li>\\n\"+\n",
       "       \"<li>use INLINE resources instead, as so:</li>\\n\"+\n",
       "       \"</ul>\\n\"+\n",
       "       \"<code>\\n\"+\n",
       "       \"from bokeh.resources import INLINE\\n\"+\n",
       "       \"output_notebook(resources=INLINE)\\n\"+\n",
       "       \"</code>\\n\"+\n",
       "       \"</div>\"}};\n",
       "  \n",
       "    function display_loaded() {\n",
       "      if (window.Bokeh !== undefined) {\n",
       "        document.getElementById(\"64f1e7a9-9f30-47ee-9561-e21b3a2a9c08\").textContent = \"BokehJS successfully loaded.\";\n",
       "      } else if (Date.now() < window._bokeh_timeout) {\n",
       "        setTimeout(display_loaded, 100)\n",
       "      }\n",
       "    }if ((window.Jupyter !== undefined) && Jupyter.notebook.kernel) {\n",
       "      comm_manager = Jupyter.notebook.kernel.comm_manager\n",
       "      comm_manager.register_target(\"6f5ff43f-86c0-4558-ad00-00fb6f14dbf5\", function () {});\n",
       "    }\n",
       "  \n",
       "    function run_callbacks() {\n",
       "      window._bokeh_onload_callbacks.forEach(function(callback) { callback() });\n",
       "      delete window._bokeh_onload_callbacks\n",
       "      console.info(\"Bokeh: all callbacks have finished\");\n",
       "    }\n",
       "  \n",
       "    function load_libs(js_urls, callback) {\n",
       "      window._bokeh_onload_callbacks.push(callback);\n",
       "      if (window._bokeh_is_loading > 0) {\n",
       "        console.log(\"Bokeh: BokehJS is being loaded, scheduling callback at\", now());\n",
       "        return null;\n",
       "      }\n",
       "      if (js_urls == null || js_urls.length === 0) {\n",
       "        run_callbacks();\n",
       "        return null;\n",
       "      }\n",
       "      console.log(\"Bokeh: BokehJS not loaded, scheduling load and callback at\", now());\n",
       "      window._bokeh_is_loading = js_urls.length;\n",
       "      for (var i = 0; i < js_urls.length; i++) {\n",
       "        var url = js_urls[i];\n",
       "        var s = document.createElement('script');\n",
       "        s.src = url;\n",
       "        s.async = false;\n",
       "        s.onreadystatechange = s.onload = function() {\n",
       "          window._bokeh_is_loading--;\n",
       "          if (window._bokeh_is_loading === 0) {\n",
       "            console.log(\"Bokeh: all BokehJS libraries loaded\");\n",
       "            run_callbacks()\n",
       "          }\n",
       "        };\n",
       "        s.onerror = function() {\n",
       "          console.warn(\"failed to load library \" + url);\n",
       "        };\n",
       "        console.log(\"Bokeh: injecting script tag for BokehJS library: \", url);\n",
       "        document.getElementsByTagName(\"head\")[0].appendChild(s);\n",
       "      }\n",
       "    };var element = document.getElementById(\"64f1e7a9-9f30-47ee-9561-e21b3a2a9c08\");\n",
       "    if (element == null) {\n",
       "      console.log(\"Bokeh: ERROR: autoload.js configured with elementid '64f1e7a9-9f30-47ee-9561-e21b3a2a9c08' but no matching script tag was found. \")\n",
       "      return false;\n",
       "    }\n",
       "  \n",
       "    var js_urls = [];\n",
       "  \n",
       "    var inline_js = [\n",
       "      function(Bokeh) {\n",
       "        (function() {\n",
       "          var fn = function() {\n",
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