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A package for processing immunofluorescence (IF) microscopy image data.

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aminnaghdloo/slide-image-utils

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slide-image-utils

This package provides a suite of programs to analyze and manipulate whole slide microscopy image data at a single cell level.

Setup

Requirements:

  • OpenCV (4.5.3)
  • Numpy (1.21.4)
  • Pandas (1.3.5)
  • Matplotlib (3.5.1)
  • scikit-image (0.19.1)

You can install the conda environment directly from requirements.yml file:

python env create --file requirements.yml

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