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win_visualize.prj
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win_visualize.prj
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<deployment-project plugin="plugin.ezdeploy" plugin-version="1.0">
<configuration build-checksum="3443809293" file="Z:\Documents\GitHub\CELL_ID\win_visualize.prj" location="Z:\Documents\GitHub\CELL_ID" name="win_visualize" preferred-package-location="Z:\Documents\GitHub\CELL_ID\win_visualize\for_redistribution" preferred-package-type="package.type.exe" target="target.ezdeploy.standalone" target-name="Application Compiler">
<param.appname>NeuroPAL_ID</param.appname>
<param.icon>${PROJECT_ROOT}\win_visualize_resources\icon.ico</param.icon>
<param.icons>
<file>${PROJECT_ROOT}\win_visualize_resources\icon_48.png</file>
<file>${PROJECT_ROOT}\win_visualize_resources\icon_32.png</file>
<file>${PROJECT_ROOT}\win_visualize_resources\icon_24.png</file>
<file>${PROJECT_ROOT}\win_visualize_resources\icon_16.png</file>
</param.icons>
<param.version>1.8</param.version>
<param.authnamewatermark>Amin Nejatbakhsh, Eviatar Yemini, et al.</param.authnamewatermark>
<param.email />
<param.company>Columbia University</param.company>
<param.summary>NeuroPAL ID software to perform (semi-) automated identification of neurons in images of NeuroPAL strains.</param.summary>
<param.description>Please read and cite the following peer-reviewed Cell publication:
https://www.cell.com/cell/fulltext/S0092-8674(20)31682-2
A free preprint is available on bioRxiv:
https://www.biorxiv.org/content/10.1101/676312v2
Citation:
Yemini E, Lin A, Nejatbakhsh A, Varol E, Sun R, Mena GE, Samuel ADT, Paninski L, Venkatachalam V, Hobert O.
NeuroPAL: A Multicolor Atlas for Whole-Brain Neuronal Identification in C. elegans. Cell. 2021 Jan 7;184(1):272- 288.e11.
https://doi.org/10.1016/j.cell.2020.12.012</param.description>
<param.screenshot>${PROJECT_ROOT}\Data\Images\NeuroPAL Software Splash Screen Small.png</param.screenshot>
<param.guid />
<param.installpath.string>\NeuroPAL_ID\</param.installpath.string>
<param.installpath.combo>option.installpath.programfiles</param.installpath.combo>
<param.logo>${PROJECT_ROOT}\Data\Images\NeuroPAL Software Logo.png</param.logo>
<param.install.notes>PLEASE READ THE FOLLOWING:
1. The NeuroPAL ID software is installed in \Program Files\NeuroPAL_ID.
Please add it to your desktop so you can easily find it.
2. The first time it is launched, the software will be slow to open. Please be patient. Subsequently, it will open much faster.</param.install.notes>
<param.target.install.notes />
<param.intermediate>${PROJECT_ROOT}\win_visualize\for_testing</param.intermediate>
<param.files.only>${PROJECT_ROOT}\win_visualize\for_redistribution_files_only</param.files.only>
<param.output>${PROJECT_ROOT}\win_visualize\for_redistribution</param.output>
<param.logdir>${PROJECT_ROOT}\win_visualize</param.logdir>
<param.enable.clean.build>false</param.enable.clean.build>
<param.user.defined.mcr.options />
<param.target.type>subtarget.standalone</param.target.type>
<param.support.packages>
<item><package displayname="Deploy Imported Models for Deep Learning Toolbox Converter for TensorFlow Models" enabled="true" name="Deep Learning Toolbox Converter for TensorFlow Models" product="Deep Learning Toolbox"/></item>
</param.support.packages>
<param.web.mcr>false</param.web.mcr>
<param.package.mcr>true</param.package.mcr>
<param.no.mcr>false</param.no.mcr>
<param.web.mcr.name>MyAppInstaller_web</param.web.mcr.name>
<param.package.mcr.name>NeuroPAL_Installer_1-8</param.package.mcr.name>
<param.no.mcr.name>MyAppInstaller_app</param.no.mcr.name>
<param.windows.command.prompt>true</param.windows.command.prompt>
<param.create.log>true</param.create.log>
<param.log.file>NeuroPAL_ID_log.txt</param.log.file>
<param.native.matlab>false</param.native.matlab>
<param.checkbox>false</param.checkbox>
<param.example />
<param.help.text>Syntax
-?
Input Arguments
-? print help on how to use the application
input arguments</param.help.text>
<unset>
<param.email />
<param.guid />
<param.installpath.combo />
<param.target.install.notes />
<param.intermediate />
<param.files.only />
<param.output />
<param.logdir />
<param.enable.clean.build />
<param.user.defined.mcr.options />
<param.target.type />
<param.no.mcr />
<param.web.mcr.name />
<param.no.mcr.name />
<param.windows.command.prompt />
<param.native.matlab />
<param.checkbox />
<param.example />
</unset>
<fileset.main>
<file>${PROJECT_ROOT}\visualize_light.mlapp</file>
</fileset.main>
<fileset.resources>
<file>${PROJECT_ROOT}\+DataHandling\PNGViewer.m</file>
<file>${PROJECT_ROOT}\Data\Documents\About.png</file>
<file>${PROJECT_ROOT}\Data\Documents\Instructions.png</file>
<file>${PROJECT_ROOT}\Data\Documents\Keyboard.png</file>
<file>${PROJECT_ROOT}\Data\Models\atlas_xo_rgb.mat</file>
<file>${PROJECT_ROOT}\Data\Models\atlas_xo_rgbw.mat</file>
<file>${PROJECT_ROOT}\Data\Models\atlas_xx_rgb.mat</file>
<file>${PROJECT_ROOT}\Data\Models\atlas_xx_rgbw.mat</file>
<file>${PROJECT_ROOT}\Data\Models\NN_model.mat</file>
<file>${PROJECT_ROOT}\Data\NeuroPAL\birth_times.mat</file>
<file>${PROJECT_ROOT}\Data\NeuroPAL\male_data.mat</file>
<file>${PROJECT_ROOT}\Data\NeuroPAL\NeuroPAL_herm_data.mat</file>
<file>${PROJECT_ROOT}\External_Dependencies\bfmatlab\bfCheckJavaMemory.m</file>
<file>${PROJECT_ROOT}\External_Dependencies\bfmatlab\bfCheckJavaPath.m</file>
<file>${PROJECT_ROOT}\External_Dependencies\bfmatlab\bfGetFileExtensions.m</file>
<file>${PROJECT_ROOT}\External_Dependencies\bfmatlab\bfGetPlane.m</file>
<file>${PROJECT_ROOT}\External_Dependencies\bfmatlab\bfGetReader.m</file>
<file>${PROJECT_ROOT}\External_Dependencies\bfmatlab\bfInitLogging.m</file>
<file>${PROJECT_ROOT}\External_Dependencies\bfmatlab\bfopen.m</file>
<file>${PROJECT_ROOT}\External_Dependencies\bfmatlab\bfOpen3DVolume.m</file>
<file>${PROJECT_ROOT}\External_Dependencies\bfmatlab\bfsave.m</file>
<file>${PROJECT_ROOT}\External_Dependencies\bfmatlab\bfUpgradeCheck.m</file>
<file>${PROJECT_ROOT}\External_Dependencies\bfmatlab\bioformats_package.jar</file>
<file>${PROJECT_ROOT}\External_Dependencies\bfmatlab\createMinimalOMEXMLMetadata.m</file>
<file>${PROJECT_ROOT}\External_Dependencies\bfmatlab\private\is_octave.m</file>
<file>${PROJECT_ROOT}\External_Dependencies\mlapptools-develop\functionSignatures.json</file>
<file>${PROJECT_ROOT}\External_Dependencies\mlapptools-develop\ISSUE_TEMPLATE.md</file>
<file>${PROJECT_ROOT}\External_Dependencies\mlapptools-develop\PULL_REQUEST_TEMPLATE.md</file>
</fileset.resources>
<fileset.package>
<file>${PROJECT_ROOT}\Data\Documents\Instructions.pdf</file>
</fileset.package>
<fileset.depfun>
<file>${PROJECT_ROOT}\+DataHandling\imreadAny.m</file>
<file>${PROJECT_ROOT}\+DataHandling\imreadCZI.m</file>
<file>${PROJECT_ROOT}\+DataHandling\imreadLif.m</file>
<file>${PROJECT_ROOT}\+DataHandling\imreadND2.m</file>
<file>${PROJECT_ROOT}\+DataHandling\imreadVlab.m</file>
<file>${PROJECT_ROOT}\+DataHandling\NeuroPALImage.m</file>
<file>${PROJECT_ROOT}\+Methods\AutoDetect.m</file>
<file>${PROJECT_ROOT}\+Methods\AutoId.m</file>
<file>${PROJECT_ROOT}\+Methods\find_outlier.m</file>
<file>${PROJECT_ROOT}\+Methods\logsumexp.m</file>
<file>${PROJECT_ROOT}\+Methods\munkres.m</file>
<file>${PROJECT_ROOT}\+Methods\munkres_extended.m</file>
<file>${PROJECT_ROOT}\+Methods\NNDetect.m</file>
<file>${PROJECT_ROOT}\+Methods\Preprocess.m</file>
<file>${PROJECT_ROOT}\+Methods\Utils.m</file>
<file>${PROJECT_ROOT}\+Neurons\Hermaphrodite.m</file>
<file>${PROJECT_ROOT}\+Neurons\Image.m</file>
<file>${PROJECT_ROOT}\+Neurons\Male.m</file>
<file>${PROJECT_ROOT}\+Neurons\Neuron.m</file>
<file>${PROJECT_ROOT}\+Neurons\NeuronBirth.m</file>
<file>${PROJECT_ROOT}\+Output\Illustration.m</file>
<file>${PROJECT_ROOT}\+Output\ImageAnalysis.m</file>
<file>${PROJECT_ROOT}\+Program\GUIPreferences.m</file>
<file>${PROJECT_ROOT}\+Program\ProgramInfo.m</file>
<file>${PROJECT_ROOT}\Data\NeuroPAL\herm_data.mat</file>
<file>${PROJECT_ROOT}\Data\NeuroPAL\NeuroPAL_male_data.mat</file>
<file>${PROJECT_ROOT}\External_Dependencies\mlapptools-develop\mlapptools.m</file>
<file>${PROJECT_ROOT}\External_Dependencies\mlapptools-develop\WidgetID.m</file>
</fileset.depfun>
<build-deliverables>
<file location="${PROJECT_ROOT}\win_visualize\for_testing" name="NeuroPAL_ID.exe" optional="false">Z:\Documents\GitHub\CELL_ID\win_visualize\for_testing\NeuroPAL_ID.exe</file>
<file location="${PROJECT_ROOT}\win_visualize\for_testing" name="readme.txt" optional="true">Z:\Documents\GitHub\CELL_ID\win_visualize\for_testing\readme.txt</file>
<file location="${PROJECT_ROOT}\win_visualize\for_testing" name="splash.png" optional="false">Z:\Documents\GitHub\CELL_ID\win_visualize\for_testing\splash.png</file>
</build-deliverables>
<workflow />
<matlab>
<root>C:\Program Files\MATLAB\R2021a</root>
<toolboxes>
<toolbox name="matlabcoder" />
<toolbox name="neuralnetwork" />
</toolboxes>
<toolbox>
<matlabcoder>
<enabled>true</enabled>
</matlabcoder>
</toolbox>
<toolbox>
<neuralnetwork>
<enabled>true</enabled>
</neuralnetwork>
</toolbox>
</matlab>
<platform>
<unix>false</unix>
<mac>false</mac>
<windows>true</windows>
<win2k>false</win2k>
<winxp>false</winxp>
<vista>false</vista>
<linux>false</linux>
<solaris>false</solaris>
<osver>10.0</osver>
<os32>false</os32>
<os64>true</os64>
<arch>win64</arch>
<matlab>true</matlab>
</platform>
</configuration>
</deployment-project>