{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":264926379,"defaultBranch":"master","name":"practical-omnitigs","ownerLogin":"algbio","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2020-05-18T12:04:00.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/62098287?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1645794583.664808","currentOid":""},"activityList":{"items":[{"before":"3784755de2a11c476ef5893b50183e19601e9f95","after":"9fa8497c8de99a70c05474c8fa8318dce49ddeb9","ref":"refs/heads/sebschmi/unspecified","pushedAt":"2023-09-15T06:59:18.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sebschmi","name":"Sebastian Schmidt","path":"/sebschmi","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/61014855?s=80&v=4"},"commit":{"message":"Hopefully make statistics computation faster.","shortMessageHtmlLink":"Hopefully make statistics computation faster."}},{"before":"532c2593b0b96fd9d4f8ac2e5abd480459e1e771","after":"3784755de2a11c476ef5893b50183e19601e9f95","ref":"refs/heads/sebschmi/unspecified","pushedAt":"2023-08-17T08:53:56.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sebschmi","name":"Sebastian Schmidt","path":"/sebschmi","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/61014855?s=80&v=4"},"commit":{"message":"Fix finding unique sequences in substring variant.","shortMessageHtmlLink":"Fix finding unique sequences in substring variant."}},{"before":"6de0758b93b8e6a805104d659592447fd6d2629b","after":"532c2593b0b96fd9d4f8ac2e5abd480459e1e771","ref":"refs/heads/sebschmi/unspecified","pushedAt":"2023-08-17T08:36:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sebschmi","name":"Sebastian Schmidt","path":"/sebschmi","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/61014855?s=80&v=4"},"commit":{"message":"Remove duplicates before checking for substrings.","shortMessageHtmlLink":"Remove duplicates before checking for substrings."}},{"before":"bf58a16b66424aef0ee1df86b9a71466b8feffc3","after":"6de0758b93b8e6a805104d659592447fd6d2629b","ref":"refs/heads/sebschmi/unspecified","pushedAt":"2023-08-17T08:13:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sebschmi","name":"Sebastian Schmidt","path":"/sebschmi","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/61014855?s=80&v=4"},"commit":{"message":"Assert that we only output proper subsequences between files.","shortMessageHtmlLink":"Assert that we only output proper subsequences between files."}},{"before":"ca8cf2ef004ef8d768b02b001fe0e4bf395ffefb","after":"bf58a16b66424aef0ee1df86b9a71466b8feffc3","ref":"refs/heads/sebschmi/unspecified","pushedAt":"2023-08-17T08:12:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sebschmi","name":"Sebastian Schmidt","path":"/sebschmi","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/61014855?s=80&v=4"},"commit":{"message":"Speed up compare-tigs with suffix arrays.","shortMessageHtmlLink":"Speed up compare-tigs with suffix arrays."}},{"before":"16a17703e6cd060863857a2d348cdecb2df12aa5","after":"ca8cf2ef004ef8d768b02b001fe0e4bf395ffefb","ref":"refs/heads/sebschmi/unspecified","pushedAt":"2023-08-16T11:56:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sebschmi","name":"Sebastian Schmidt","path":"/sebschmi","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/61014855?s=80&v=4"},"commit":{"message":"Implement method to compare tigs including substring relationships.","shortMessageHtmlLink":"Implement method to compare tigs including substring relationships."}},{"before":"e06d58b60f1d17f67c5774bc3fb2e5cbf305067d","after":"16a17703e6cd060863857a2d348cdecb2df12aa5","ref":"refs/heads/sebschmi/unspecified","pushedAt":"2023-08-15T06:43:22.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sebschmi","name":"Sebastian Schmidt","path":"/sebschmi","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/61014855?s=80&v=4"},"commit":{"message":"Make trivial omnitig strict reporting similar to flowtigs.\n\nBefore, we reported only the first and last maximal strictly safe subwalks of trivial omnitigs that are not strictly safe. Now we report all, same as we do it with flowtigs that are not strictly safe.","shortMessageHtmlLink":"Make trivial omnitig strict reporting similar to flowtigs."}},{"before":"f1c451ee2ce59f6e63ca32c77ac0cd590a8d5ecb","after":"e06d58b60f1d17f67c5774bc3fb2e5cbf305067d","ref":"refs/heads/sebschmi/unspecified","pushedAt":"2023-08-15T06:42:14.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sebschmi","name":"Sebastian Schmidt","path":"/sebschmi","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/61014855?s=80&v=4"},"commit":{"message":"Make multi-safe walks strict reporting similar to flowtigs.\n\nBefore, we reported only the first and last maximal strictly safe subwalks of trivial omnitigs that are not strictly safe. Now we report all, same as we do it with flowtigs that are not strictly safe.","shortMessageHtmlLink":"Make multi-safe walks strict reporting similar to flowtigs."}},{"before":"d038ac3fe282a534fab24e4e3e5342286c6cf276","after":"f1c451ee2ce59f6e63ca32c77ac0cd590a8d5ecb","ref":"refs/heads/sebschmi/unspecified","pushedAt":"2023-08-03T09:34:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sebschmi","name":"Sebastian Schmidt","path":"/sebschmi","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/61014855?s=80&v=4"},"commit":{"message":"Use strict model for multi-safe and optionally for trivial omnitigs.","shortMessageHtmlLink":"Use strict model for multi-safe and optionally for trivial omnitigs."}},{"before":"c74a979af4b59c1f99777b2be2cacf6796d081ac","after":"d038ac3fe282a534fab24e4e3e5342286c6cf276","ref":"refs/heads/sebschmi/unspecified","pushedAt":"2023-08-02T10:12:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sebschmi","name":"Sebastian Schmidt","path":"/sebschmi","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/61014855?s=80&v=4"},"commit":{"message":"Fix too long trivial omnitigs in cycles.","shortMessageHtmlLink":"Fix too long trivial omnitigs in cycles."}},{"before":"030088ef746a0f3289140c37dd762601e535515c","after":"c74a979af4b59c1f99777b2be2cacf6796d081ac","ref":"refs/heads/sebschmi/unspecified","pushedAt":"2023-08-01T10:55:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sebschmi","name":"Sebastian Schmidt","path":"/sebschmi","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/61014855?s=80&v=4"},"commit":{"message":"Handle reverse-complemental SCCs for multi-safe walks.","shortMessageHtmlLink":"Handle reverse-complemental SCCs for multi-safe walks."}},{"before":"2b97edbf47c2c5e040c5c76f56252dccee2981e6","after":"030088ef746a0f3289140c37dd762601e535515c","ref":"refs/heads/sebschmi/unspecified","pushedAt":"2023-08-01T09:52:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sebschmi","name":"Sebastian Schmidt","path":"/sebschmi","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/61014855?s=80&v=4"},"commit":{"message":"Fix multi-safe walks for multiple SCCs.","shortMessageHtmlLink":"Fix multi-safe walks for multiple SCCs."}},{"before":"690a836ebc158b17d68593fdcc59c1a05cc07b20","after":"2b97edbf47c2c5e040c5c76f56252dccee2981e6","ref":"refs/heads/sebschmi/unspecified","pushedAt":"2023-08-01T08:13:39.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"sebschmi","name":"Sebastian Schmidt","path":"/sebschmi","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/61014855?s=80&v=4"},"commit":{"message":"Add command to compare two fasta files.","shortMessageHtmlLink":"Add command to compare two fasta files."}},{"before":"32d1c0d6186f1a0baad8673cf7616666cb0af453","after":"690a836ebc158b17d68593fdcc59c1a05cc07b20","ref":"refs/heads/sebschmi/unspecified","pushedAt":"2023-07-04T12:42:22.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"sebschmi","name":"Sebastian Schmidt","path":"/sebschmi","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/61014855?s=80&v=4"},"commit":{"message":"Fix multi-safe subcommand, compute multi-safe instead of omnitigs.","shortMessageHtmlLink":"Fix multi-safe subcommand, compute multi-safe instead of omnitigs."}},{"before":"e1640a6220dedb85ad90f83d9b141f4fd257a6e5","after":"32d1c0d6186f1a0baad8673cf7616666cb0af453","ref":"refs/heads/sebschmi/unspecified","pushedAt":"2023-07-04T12:40:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sebschmi","name":"Sebastian Schmidt","path":"/sebschmi","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/61014855?s=80&v=4"},"commit":{"message":"Fix multi-safe subcommand, compute multi-safe instead of omnitigs.","shortMessageHtmlLink":"Fix multi-safe subcommand, compute multi-safe instead of omnitigs."}},{"before":"450d33333a524d0a89179518981d46f397f36676","after":"e1640a6220dedb85ad90f83d9b141f4fd257a6e5","ref":"refs/heads/sebschmi/unspecified","pushedAt":"2023-06-22T09:57:18.786Z","pushType":"push","commitsCount":1,"pusher":{"login":"sebschmi","name":"Sebastian Schmidt","path":"/sebschmi","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/61014855?s=80&v=4"},"commit":{"message":"Add subcommand to compute maximal multi-safe walks.","shortMessageHtmlLink":"Add subcommand to compute maximal multi-safe walks."}}],"hasNextPage":false,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAADgTO1pwA","startCursor":null,"endCursor":null}},"title":"Activity ยท algbio/practical-omnitigs"}