{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":465491574,"defaultBranch":"master","name":"oligoCLIP","ownerLogin":"algaebrown","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2022-03-02T22:40:21.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/17774672?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1684975563.466712","currentOid":""},"activityList":{"items":[{"before":"306704414ab8ec7a27b64c8e2340608bd042464c","after":"a5da597a199417a1718fe8a7f491f3e6f70012fd","ref":"refs/heads/dev/algaebrown/oligo-pe","pushedAt":"2024-01-19T18:16:20.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"algaebrown","name":"Hsuan-lin Her","path":"/algaebrown","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/17774672?s=80&v=4"},"commit":{"message":"new data","shortMessageHtmlLink":"new data"}},{"before":"c5920efbc69c8ad90785a8151e1e8333d2ddd980","after":"306704414ab8ec7a27b64c8e2340608bd042464c","ref":"refs/heads/dev/algaebrown/oligo-pe","pushedAt":"2023-12-14T03:08:30.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"algaebrown","name":"Hsuan-lin Her","path":"/algaebrown","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/17774672?s=80&v=4"},"commit":{"message":"change path to tscc2","shortMessageHtmlLink":"change path to tscc2"}},{"before":"50063f5c586978103a36ffdd196cc662a92025ae","after":"c5920efbc69c8ad90785a8151e1e8333d2ddd980","ref":"refs/heads/dev/algaebrown/oligo-pe","pushedAt":"2023-11-07T23:50:34.000Z","pushType":"push","commitsCount":5,"pusher":{"login":"algaebrown","name":"Hsuan-lin Her","path":"/algaebrown","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/17774672?s=80&v=4"},"commit":{"message":"pipeline to prepare scoring variants","shortMessageHtmlLink":"pipeline to prepare scoring variants"}},{"before":"b03580a4180eca428f7ad80166b075b2418c6624","after":"50063f5c586978103a36ffdd196cc662a92025ae","ref":"refs/heads/dev/algaebrown/oligo-pe","pushedAt":"2023-08-22T18:28:44.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"algaebrown","name":"Hsuan-lin Her","path":"/algaebrown","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/17774672?s=80&v=4"},"commit":{"message":"update with snakemake version","shortMessageHtmlLink":"update with snakemake version"}},{"before":"49d158fd939b13009ffd2f812d8d540df7688f3b","after":"b03580a4180eca428f7ad80166b075b2418c6624","ref":"refs/heads/dev/algaebrown/oligo-pe","pushedAt":"2023-08-21T23:10:03.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"algaebrown","name":"Hsuan-lin Her","path":"/algaebrown","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/17774672?s=80&v=4"},"commit":{"message":"specify rules for external bam's bw","shortMessageHtmlLink":"specify rules for external bam's bw"}},{"before":"57738e982e32eb9f3208ed8d70cf34797a23efa0","after":"49d158fd939b13009ffd2f812d8d540df7688f3b","ref":"refs/heads/dev/algaebrown/oligo-pe","pushedAt":"2023-08-21T18:07:02.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"algaebrown","name":"Hsuan-lin Her","path":"/algaebrown","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/17774672?s=80&v=4"},"commit":{"message":"update .py to .smk, add singleplex example","shortMessageHtmlLink":"update .py to .smk, add singleplex example"}},{"before":"2e50dc3d6045bc1d1bdf23397445a30854c54c76","after":"57738e982e32eb9f3208ed8d70cf34797a23efa0","ref":"refs/heads/dev/algaebrown/oligo-pe","pushedAt":"2023-08-18T17:15:42.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"algaebrown","name":"Hsuan-lin Her","path":"/algaebrown","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/17774672?s=80&v=4"},"commit":{"message":"cleanup unused files","shortMessageHtmlLink":"cleanup unused files"}},{"before":"4d3561a76f99f8d4e407705bcb51ce60eff7d7a5","after":"2e50dc3d6045bc1d1bdf23397445a30854c54c76","ref":"refs/heads/dev/algaebrown/oligo-pe","pushedAt":"2023-08-18T17:10:54.000Z","pushType":"push","commitsCount":11,"pusher":{"login":"algaebrown","name":"Hsuan-lin Her","path":"/algaebrown","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/17774672?s=80&v=4"},"commit":{"message":"update readme","shortMessageHtmlLink":"update readme"}},{"before":"5ac570d00dcdefaed5b81d90c71ee429a9eb90f8","after":"379297bc3f7c0384a9670c4dd239de6d815bf6fd","ref":"refs/heads/brian_nextflow","pushedAt":"2023-06-05T03:35:01.554Z","pushType":"push","commitsCount":1,"pusher":{"login":"byee4","name":"Brian Yee","path":"/byee4","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8336575?s=80&v=4"},"commit":{"message":"add samtools sort, umicollapse and samtools index","shortMessageHtmlLink":"add samtools sort, umicollapse and samtools index"}},{"before":"92849a7643efce7473627bb76c2d0a3a75571a45","after":"5ac570d00dcdefaed5b81d90c71ee429a9eb90f8","ref":"refs/heads/brian_nextflow","pushedAt":"2023-06-04T22:53:20.211Z","pushType":"push","commitsCount":1,"pusher":{"login":"byee4","name":"Brian Yee","path":"/byee4","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8336575?s=80&v=4"},"commit":{"message":"add post trim fastqc","shortMessageHtmlLink":"add post trim fastqc"}},{"before":"5242a88599427b449fe3d652273cc1388b1b427f","after":"92849a7643efce7473627bb76c2d0a3a75571a45","ref":"refs/heads/brian_nextflow","pushedAt":"2023-06-04T19:22:35.401Z","pushType":"push","commitsCount":1,"pusher":{"login":"byee4","name":"Brian Yee","path":"/byee4","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8336575?s=80&v=4"},"commit":{"message":"add trim_barcode_r1 step","shortMessageHtmlLink":"add trim_barcode_r1 step"}},{"before":"4a7fa256db1b4991ce6e852ce834967076959550","after":"5242a88599427b449fe3d652273cc1388b1b427f","ref":"refs/heads/brian_nextflow","pushedAt":"2023-06-04T16:57:23.560Z","pushType":"push","commitsCount":3,"pusher":{"login":"byee4","name":"Brian Yee","path":"/byee4","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8336575?s=80&v=4"},"commit":{"message":"splits demultiplexed reads properly","shortMessageHtmlLink":"splits demultiplexed reads properly"}},{"before":"6837252d82e700192768cbb35ca71c38820be1b5","after":"4a7fa256db1b4991ce6e852ce834967076959550","ref":"refs/heads/brian_nextflow","pushedAt":"2023-05-27T16:19:16.738Z","pushType":"push","commitsCount":1,"pusher":{"login":"byee4","name":"Brian Yee","path":"/byee4","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8336575?s=80&v=4"},"commit":{"message":"rename outputs","shortMessageHtmlLink":"rename outputs"}},{"before":"23d49072f56cee4582abbf6c79a7a7078c3b003b","after":"6837252d82e700192768cbb35ca71c38820be1b5","ref":"refs/heads/brian_nextflow","pushedAt":"2023-05-25T14:47:15.387Z","pushType":"push","commitsCount":1,"pusher":{"login":"byee4","name":"Brian Yee","path":"/byee4","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8336575?s=80&v=4"},"commit":{"message":"add trim_umi_from_read2 step","shortMessageHtmlLink":"add trim_umi_from_read2 step"}},{"before":null,"after":"23d49072f56cee4582abbf6c79a7a7078c3b003b","ref":"refs/heads/brian_nextflow","pushedAt":"2023-05-25T00:46:03.466Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"byee4","name":"Brian Yee","path":"/byee4","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8336575?s=80&v=4"},"commit":{"message":"add fastp trimming step to preprocess.nf","shortMessageHtmlLink":"add fastp trimming step to preprocess.nf"}},{"before":"6d9a9466272b53396ab0cd175dc5b7c694778e96","after":"4d3561a76f99f8d4e407705bcb51ce60eff7d7a5","ref":"refs/heads/dev/algaebrown/oligo-pe","pushedAt":"2023-04-15T23:55:23.000Z","pushType":"push","commitsCount":16,"pusher":{"login":"algaebrown","name":"Hsuan-lin Her","path":"/algaebrown","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/17774672?s=80&v=4"},"commit":{"message":"update readme","shortMessageHtmlLink":"update readme"}}],"hasNextPage":false,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAD5D7TvAA","startCursor":null,"endCursor":null}},"title":"Activity · algaebrown/oligoCLIP"}