forked from jdblischak/singlecell-qtl
/
environment.yaml
348 lines (348 loc) · 9.14 KB
/
environment.yaml
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name: scqtl
channels:
- jdblischak
- bioconda
- conda-forge
- anaconda
- defaults
dependencies:
- numpy=1.14.3=py35hcd700cb_2
- numpy-base=1.14.3=py35h0ea5e3f_1
- bcftools=1.6=0
- bioconductor-annotationdbi=1.40.0=r3.4.1_0
- bioconductor-biobase=2.38.0=r3.4.1_0
- bioconductor-biocgenerics=0.24.0=r3.4.1_0
- bioconductor-biocparallel=1.12.0=r3.4.1_0
- bioconductor-biomart=2.34.0=r3.4.1_0
- bioconductor-edger=3.20.1=r3.4.1_0
- bioconductor-go.db=3.5.0=r3.4.1_1
- bioconductor-iranges=2.12.0=r3.4.1_0
- bioconductor-limma=3.34.1=r3.4.1_0
- bioconductor-pcamethods=1.70.0=r3.4.1_0
- bioconductor-s4vectors=0.16.0=r3.4.1_0
- fastqc=0.11.6=pl5.22.0_0
- htslib=1.6=0
- multiqc=1.3=py35_2
- pysam=0.11.2.2=py35_1
- pysftp=0.2.9=py35_0
- pytabix=0.0.2=py35h1341992_4
- r-data.table=1.10.4=r3.4.1_0
- samtools=1.5=1
- snakemake=4.4.0=py35_0
- sra-tools=2.8.2=0
- subread=1.5.3=0
- tabix=0.2.6=ha92aebf_0
- umi_tools=0.5.3=py35_0
- verifybamid=1.1.3=0
- aioeasywebdav=2.2.0=py35_0
- aiohttp=2.0.7=py35_0
- appdirs=1.4.3=py_0
- asn1crypto=0.22.0=py35_0
- async-timeout=1.2.1=py35_0
- backports.functools_lru_cache=1.4=py35_1
- backports.weakref=1.0rc1=py35_1
- biopython=1.70=py35_2
- bleach=1.5.0=py35_0
- bzip2=1.0.6=1
- ca-certificates=2017.11.5=0
- cairo=1.14.10=0
- certifi=2016.9.26=py35_0
- cffi=1.11.2=py35_0
- chardet=3.0.4=py35_0
- click=6.7=py_1
- colormath=2.1.1=py35_1
- configargparse=0.12.0=py35_0
- curl=7.54.1=0
- cycler=0.10.0=py35_0
- cython=0.27.3=py35_0
- dbus=1.10.22=0
- decorator=4.1.2=py35_0
- docutils=0.14=py35_0
- dropbox=7.3.1=py35_0
- entrypoints=0.2.3=py35_1
- expat=2.2.5=0
- filechunkio=1.8=py35_1
- fontconfig=2.12.6=0
- freetype=2.8.1=0
- ftputil=3.3.1=py35_0
- future=0.16.0=py35_0
- gettext=0.19.7=1
- git=2.14.2=3
- git-lfs=2.4.2=0
- glib=2.55.0=0
- gmp=6.1.2=0
- graphite2=1.3.10=0
- gsl=2.1=2
- gst-plugins-base=1.8.0=0
- gstreamer=1.8.0=1
- harfbuzz=1.7.1=0
- hdf5=1.10.1=1
- html5lib=0.9999999=py35_0
- icu=58.2=0
- idna=2.6=py35_1
- ipykernel=4.7.0=py35_0
- ipython=6.2.1=py35_1
- ipython_genutils=0.2.0=py35_0
- jedi=0.10.2=py35_0
- jpeg=9b=2
- jsonschema=2.6.0=py35_0
- jupyter=1.0.0=py35_0
- jupyter_console=5.2.0=py35_0
- jupyter_core=4.4.0=py_0
- krb5=1.14.2=0
- libffi=3.2.1=3
- libgfortran=3.0.0=1
- libpng=1.6.34=0
- libsodium=1.0.15=1
- libssh2=1.8.0=2
- libtiff=4.0.9=0
- libuuid=1.0.3=1
- libxcb=1.12=1
- libxml2=2.9.7=0
- lzstring=1.0.3=py35_0
- markdown=2.6.9=py35_0
- markupsafe=1.0=py35_0
- matplotlib=2.1.1=py35_2
- mistune=0.8.3=py_0
- mkl_fft=1.0.2=py35_0
- mkl_random=1.0.1=py35_0
- mmtf-python=1.0.10=py_0
- msgpack-python=0.4.8=py35_0
- multidict=2.1.4=py35_0
- nbconvert=5.3.1=py_1
- nbformat=4.4.0=py35_0
- ncurses=5.9=10
- networkx=1.11=py35_0
- nlopt=2.4.2=py35_2
- olefile=0.44=py35_0
- openblas=0.2.20=6
- openssl=1.0.2n=0
- pandas=0.22.0=py35_0
- pandoc=1.19.2=0
- pandocfilters=1.4.1=py35_0
- pango=1.40.14=0
- paramiko=2.3.1=py_0
- pcre=8.39=0
- perl=5.22.0.1=0
- pickleshare=0.7.4=py35_0
- pillow=5.0.0=py35_0
- pip=9.0.1=py35_1
- pixman=0.34.0=1
- prompt_toolkit=1.0.15=py35_0
- protobuf=3.5.1=py35_3
- psutil=5.4.0=py35_0
- ptyprocess=0.5.2=py35_0
- pyasn1=0.4.2=py_0
- pycparser=2.18=py35_0
- pygments=2.2.0=py35_0
- pynacl=1.1.2=py35_0
- pyopenssl=17.4.0=py35_0
- pyparsing=2.2.0=py35_0
- pyqt=5.6.0=py35_4
- pysocks=1.6.8=py35_1
- python=3.5.4=3
- python-dateutil=2.6.1=py35_0
- pytz=2017.3=py_2
- pyyaml=3.12=py35_1
- pyzmq=16.0.2=py35_3
- qt=5.6.2=7
- qtconsole=4.3.1=py35_0
- r-assertthat=0.1=r3.4.1_0
- r-backports=1.0.5=r3.4.1_0
- r-base=3.4.1=3
- r-base64enc=0.1_3=r3.4.1_0
- r-bh=1.65.0_1=r3.4.1_0
- r-bindr=0.1=r3.4.1_0
- r-bindrcpp=0.2=r3.4.1_0
- r-bit=1.1_12=r3.4.1_0
- r-bit64=0.9_5=r3.4.1_0
- r-bitops=1.0_6=r3.4.1_0
- r-blob=1.1.0=r3.4.1_0
- r-brew=1.0_6=r3.4.1_0
- r-cairo=1.5_9=r3.4.1_0
- r-callr=1.0.0=r3.4.1_0
- r-car=2.1_4=r3.4.1_0
- r-catools=1.17.1=r3.4.1_0
- r-codetools=0.2_15=r3.4.1_0
- r-colorramps=2.3=r3.4.1_0
- r-colorspace=1.3_2=r3.4.1_0
- r-cowplot=0.9.1=r3.4.1_0
- r-curl=2.4=r3.4.1_0
- r-dbi=0.6_1=r3.4.1_0
- r-dbplyr=1.1.0=r3.4.1_0
- r-devtools=1.13.2=r3.4.1_0
- r-dichromat=2.0_0=r3.4.1_0
- r-digest=0.6.12=r3.4.1_0
- r-distillery=1.0_4=r3.4.1_0
- r-doparallel=1.0.10=r3.4.1_0
- r-dplyr=0.7.4=r3.4.1_0
- r-dt=0.2=r3.4.1_0
- r-evaluate=0.10.1=r3.4.1_0
- r-extremes=2.0_8=r3.4.1_0
- r-fastcluster=1.1.24=r3.4.1_0
- r-flexmix=2.3_13=r3.4.1_0
- r-foreach=1.4.3=r3.4.1_0
- r-futile.logger=1.4.3=r3.4.1_0
- r-futile.options=1.0.0=r3.4.1_0
- r-gdata=2.17.0=r3.4.1_0
- r-getpass=0.2_2=r3.4.1_0
- r-ggplot2=2.2.1=r3.4.1_0
- r-git2r=0.19.0=r3.4.1_0
- r-glue=1.1.1=r3.4.1_0
- r-gplots=3.0.1=r3.4.1_0
- r-gtable=0.2.0=r3.4.1_0
- r-gtools=3.5.0=r3.4.1_0
- r-highr=0.6=r3.4.1_0
- r-hms=0.3=r3.4.1_0
- r-htmltools=0.3.6=r3.4.1_0
- r-htmlwidgets=0.9=r3.4.1_0
- r-httr=1.2.1=r3.4.1_0
- r-iterators=1.0.8=r3.4.1_0
- r-jsonlite=1.4=r3.4.1_0
- r-kernsmooth=2.23_15=r3.4.1_0
- r-knitr=1.20=r3.4.1_0
- r-labeling=0.3=r3.4.1_0
- r-lambda.r=1.1.9=r3.4.1_0
- r-lattice=0.20_34=r3.4.1_0
- r-lazyeval=0.2.0=r3.4.1_0
- r-lme4=1.1_13=r3.4.1_0
- r-lmoments=1.2_3=r3.4.1_0
- r-locfit=1.5_9.1=r3.4.1_0
- r-magrittr=1.5=r3.4.1_0
- r-markdown=0.8=r3.4.1_0
- r-mass=7.3_45=r3.4.1_0
- r-matrix=1.2_7.1=r3.4.1_0
- r-matrixmodels=0.4_1=r3.4.1_0
- r-memoise=1.1.0=r3.4.1_0
- r-mgcv=1.8_17=r3.4.1_0
- r-mime=0.5=r3.4.1_0
- r-minqa=1.2.4=r3.4.1_0
- r-modeltools=0.2_21=r3.4.1_0
- r-munsell=0.4.3=r3.4.1_0
- r-nlme=3.1_131=r3.4.1_0
- r-nloptr=1.0.4=r3.4.1_0
- r-nnet=7.3_12=r3.4.1_0
- r-openssl=0.9.7=r3.4.1_0
- r-pbkrtest=0.4_7=r3.4.1_0
- r-pkgconfig=2.0.1=r3.4.1_0
- r-plogr=0.1_1=r3.4.1_0
- r-plyr=1.8.4=r3.4.1_0
- r-prettyunits=1.0.2=r3.4.1_0
- r-progress=1.1.2=r3.4.1_0
- r-purrr=0.2.2=r3.4.1_0
- r-quantreg=5.33=r3.4.1_0
- r-r.methodss3=1.7.1=r3.4.1_0
- r-r.oo=1.21.0=r3.4.1_0
- r-r.utils=2.5.0=r3.4.1_0
- r-r6=2.2.0=r3.4.1_0
- r-rcolorbrewer=1.1_2=r3.4.1_0
- r-rcpp=0.12.13=r3.4.1_0
- r-rcpparmadillo=0.7.800.2.0=r3.4.1_0
- r-rcppeigen=0.3.2.9.1=r3.4.1_0
- r-rcurl=1.95_4.8=r3.4.1_0
- r-readr=1.1.1=r3.4.1_0
- r-reshape2=1.4.2=r3.4.1_0
- r-rjson=0.2.15=r3.4.1_0
- r-rlang=0.1.2=r3.4.1_0
- r-rmarkdown=1.8=r3.4.1_0
- r-rmtstat=0.3=r3.4.1_0
- r-rook=1.1_1=r3.4.1_0
- r-rprojroot=1.2=r3.4.1_0
- r-rsqlite=2.0=r3.4.1_0
- r-rstudioapi=0.7=r3.4.1_0
- r-scales=0.5.0=r3.4.1_0
- r-snow=0.4_2=r3.4.1_0
- r-sparsem=1.76=r3.4.1_0
- r-stringi=1.1.2=r3.4.1_0
- r-stringr=1.2.0=r3.4.1_0
- r-testit=0.6=r3.4.1_0
- r-tibble=1.3.3=r3.4.1_0
- r-tidyr=0.7.1=r3.4.1_0
- r-tidyselect=0.2.3=r3.4.1_0
- r-viridislite=0.2.0=r3.4.1_0
- r-whisker=0.3_2=r3.4.1_0
- r-withr=1.0.2=r3.4.1_0
- r-xml=3.98_1.6=r3.4.1_0
- r-yaml=2.1.14=r3.4.1_0
- ratelimiter=1.2.0=py35_0
- readline=7.0=0
- regex=2017.12.12=py35_0
- rpy2=2.8.5=py35r3.4.1_0
- simplegeneric=0.8.1=py35_0
- simplejson=3.11.1=py35_0
- singledispatch=3.4.0.3=py35_0
- sip=4.18=py35_1
- spectra=0.0.7=py35_0
- sqlite=3.20.1=2
- testpath=0.3.1=py35_0
- tk=8.6.7=0
- traitlets=4.3.2=py35_0
- urllib3=1.22=py35_0
- wcwidth=0.1.7=py35_0
- webencodings=0.5=py35_0
- werkzeug=0.14.1=py_0
- wheel=0.30.0=py35_2
- wrapt=1.10.11=py35_0
- xorg-kbproto=1.0.7=1
- xorg-libice=1.0.9=2
- xorg-libsm=1.2.2=2
- xorg-libx11=1.6.4=6
- xorg-libxau=1.0.8=3
- xorg-libxdmcp=1.1.2=3
- xorg-libxext=1.3.3=2
- xorg-libxrender=0.9.10=0
- xorg-renderproto=0.11.1=1
- xorg-xextproto=7.3.0=1
- xorg-xproto=7.0.31=6
- xz=5.2.3=0
- yaml=0.1.6=0
- yarl=0.10.0=py35_0
- zeromq=4.2.1=1
- zlib=1.2.11=0
- backports=1.0=py35_1
- bcrypt=3.1.4=py35ha35c455_0
- blas=1.0=mkl
- bokeh=0.13.0=py35_0
- colorcet=1.0.0=py35_0
- cryptography=2.2.1=py35h14c3975_0
- cudatoolkit=8.0=3
- cudnn=6.0.21=cuda8.0_0
- docopt=0.6.2=py35_0
- intel-openmp=2018.0.0=hc7b2577_8
- ipywidgets=7.1.0=py35_0
- jinja2=2.10=py35_0
- jupyter_client=5.2.1=py35_0
- libgcc=7.2.0=h69d50b8_2
- libgcc-ng=7.2.0=h7cc24e2_2
- libgfortran-ng=7.2.0=hdf63c60_3
- libiconv=1.15=h63c8f33_5
- libopenblas=0.2.20=h9ac9557_7
- libprotobuf=3.4.1=h5b8497f_0
- libstdcxx-ng=7.2.0=h7a57d05_2
- mkl=2018.0.1=h19d6760_4
- notebook=5.4.1=py35_0
- openjdk=8.0.121=1
- packaging=17.1=py35_0
- pexpect=4.3.1=py35_0
- reportlab=3.4.0=py35_0
- requests=2.14.2=py35_0
- scikit-learn=0.19.1=py35hbf1f462_0
- scipy=1.0.0=py35hcbbe4a2_0
- send2trash=1.5.0=py35_0
- setuptools=38.4.0=py35_0
- six=1.11.0=py35_1
- tensorflow-gpu=1.3.0=0
- tensorflow-gpu-base=1.3.0=py35cuda8.0cudnn6.0_1
- tensorflow-tensorboard=0.1.5=py35_0
- terminado=0.8.1=py35_0
- tornado=4.5.3=py35_0
- wget=1.19.1=he4ec0ba_0
- widgetsnbextension=3.1.0=py35_0
- bioconductor-scde=1.99.1=r3.4.1_0
- bioconductor-variancepartition=1.4.2=r3.4.1_0
- r-heatmap3=1.1.1=r3.4.1_0
- r-workflowr=0.11.0=r3.4.1_0
- pip:
- scqtl==0.1
- tensorflow==1.3.0
prefix: /scratch/midway2/aksarkar/miniconda3/envs/scqtl