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I'm having trouble converting pairs to hic files, this is the content of my pair file, when I use the following command java -Xmx2g -jar juicer_tools.1.9.9_jcuda.0.8.jar pre ./test.pair test.hic mm10 gives the following error
`Not including fragment map
Start preprocess
Writing header
Writing body
...............................
Writing footer
Finished preprocess
Calculating norms for zoom BP_2500000
Calculating norms for zoom BP_1000000
Calculating norms for zoom BP_500000
Calculating norms for zoom BP_250000
Calculating norms for zoom BP_100000java.lang.ArrayIndexOutOfBoundsException: 1296
at juicebox.tools.utils.original.NormalizationCalculations.computeVC(NormalizationCalculations.java:319)
at juicebox.tools.utils.original.NormalizationVectorUpdater.updateHicFile(NormalizationVectorUpdater.java:161)
at juicebox.tools.clt.old.PreProcessing.run(PreProcessing.java:121)
at juicebox.tools.HiCTools.main(HiCTools.java:96) I speculate that there may be a problem with normalize. When I add-n`, this error will not appear. I hope to get your answer
The text was updated successfully, but these errors were encountered:
I'm having trouble converting pairs to hic files, this is the content of my pair file, when I use the following command
java -Xmx2g -jar juicer_tools.1.9.9_jcuda.0.8.jar pre ./test.pair test.hic mm10
gives the following error`Not including fragment map
Start preprocess
Writing header
Writing body
...............................
Writing footer
Finished preprocess
Calculating norms for zoom BP_2500000
Calculating norms for zoom BP_1000000
Calculating norms for zoom BP_500000
Calculating norms for zoom BP_250000
Calculating norms for zoom BP_100000java.lang.ArrayIndexOutOfBoundsException: 1296
at juicebox.tools.utils.original.NormalizationCalculations.computeVC(NormalizationCalculations.java:319)
at juicebox.tools.utils.original.NormalizationVectorUpdater.updateHicFile(NormalizationVectorUpdater.java:161)
at juicebox.tools.clt.old.PreProcessing.run(PreProcessing.java:121)
at juicebox.tools.HiCTools.main(HiCTools.java:96)
I speculate that there may be a problem with normalize. When I add
-n`, this error will not appear. I hope to get your answerThe text was updated successfully, but these errors were encountered: