Process dumped core

[Dale-Muccignat]

Hi Team,

Love sioyek so far, awesome work.

Every now and then I come across a pdf that refuses to open. Every time I try it crashes with a coredump

systemd-coredump[3543436]: [🡕] Process 3543424 (sioyek) of user 1000 dumped core.
                                                       
                                                       Stack trace of thread 3543424:
                                                       #0  0x00007c5ac40ab32c n/a (libc.so.6 + 0x8d32c)
                                                       #1  0x00007c5ac405a6c8 raise (libc.so.6 + 0x3c6c8)
                                                       #2  0x00007c5ac40424b8 abort (libc.so.6 + 0x244b8)
                                                       #3  0x00007c5ac42dd3b2 _ZSt21__glibcxx_assert_failPKciS0_S0_ (libstdc++.so.6 + 0xdd3b2)
                                                       #4  0x0000639ae75f12d0 n/a (sioyek + 0x4d2d0)
                                                       #5  0x0000639ae75f14b6 n/a (sioyek + 0x4d4b6)
                                                       #6  0x0000639ae75f36f3 n/a (sioyek + 0x4f6f3)
                                                       #7  0x0000639ae7732c99 n/a (sioyek + 0x18ec99)
                                                       #8  0x0000639ae773a19f n/a (sioyek + 0x19619f)
                                                       #9  0x0000639ae7624c50 n/a (sioyek + 0x80c50)
                                                       #10 0x0000639ae75dd3d5 n/a (sioyek + 0x393d5)
                                                       #11 0x00007c5ac4043cd0 n/a (libc.so.6 + 0x25cd0)
                                                       #12 0x00007c5ac4043d8a __libc_start_main (libc.so.6 + 0x25d8a)
                                                       #13 0x0000639ae75df3c5 n/a (sioyek + 0x3b3c5)
                                                       
                                                       Stack trace of thread 3543427:
                                                       #0  0x00007c5ac41190bf __poll (libc.so.6 + 0xfb0bf)
                                                       #1  0x00007c5abff0320b n/a (libxcb.so.1 + 0xd20b)
                                                       #2  0x00007c5abff04f3d xcb_wait_for_event (libxcb.so.1 + 0xef3d)
                                                       #3  0x00007c5abfb89ff2 n/a (libQt5XcbQpa.so.5 + 0x5cff2)
                                                       #4  0x00007c5ac46eb88a n/a (libQt5Core.so.5 + 0xeb88a)
                                                       #5  0x00007c5ac40a955a n/a (libc.so.6 + 0x8b55a)
                                                       #6  0x00007c5ac4126a3c n/a (libc.so.6 + 0x108a3c)
                                                       
                                                       Stack trace of thread 3543426:
                                                       #0  0x00007c5ac41190bf __poll (libc.so.6 + 0xfb0bf)
                                                       #1  0x00007c5ac277f306 n/a (libglib-2.0.so.0 + 0xb9306)
                                                       #2  0x00007c5ac271f712 g_main_context_iteration (libglib-2.0.so.0 + 0x59712)
                                                       #3  0x00007c5ac48e288c _ZN20QEventDispatcherGlib13processEventsE6QFlagsIN10QEventLoop17ProcessEventsFlagEE (libQt5Core.so.5 + 0x2e288c)
                                                       #4  0x00007c5ac4892774 _ZN10QEventLoop4execE6QFlagsINS_17ProcessEventsFlagEE (libQt5Core.so.5 + 0x292774)
                                                       #5  0x00007c5ac46ef666 _ZN7QThread4execEv (libQt5Core.so.5 + 0xef666)
                                                       #6  0x00007c5abf747a9a n/a (libQt5DBus.so.5 + 0x17a9a)
                                                       #7  0x00007c5ac46eb88a n/a (libQt5Core.so.5 + 0xeb88a)
                                                       #8  0x00007c5ac40a955a n/a (libc.so.6 + 0x8b55a)
                                                       #9  0x00007c5ac4126a3c n/a (libc.so.6 + 0x108a3c)
                                                       
                                                       Stack trace of thread 3543430:
                                                       #0  0x00007c5ac40f2335 clock_nanosleep (libc.so.6 + 0xd4335)
                                                       #1  0x00007c5ac40fd3e7 __nanosleep (libc.so.6 + 0xdf3e7)
                                                       #2  0x0000639ae7665441 n/a (sioyek + 0xc1441)
                                                       #3  0x00007c5ac42e1943 execute_native_thread_routine (libstdc++.so.6 + 0xe1943)
                                                       #4  0x00007c5ac40a955a n/a (libc.so.6 + 0x8b55a)
                                                       #5  0x00007c5ac4126a3c n/a (libc.so.6 + 0x108a3c)
                                                       
                                                       Stack trace of thread 3543434:
                                                       #0  0x00007c5ac41196bc read (libc.so.6 + 0xfb6bc)
                                                       #1  0x00007c5ac40a0993 _IO_file_underflow (libc.so.6 + 0x82993)
                                                       #2  0x00007c5ac40a1b40 n/a (libc.so.6 + 0x83b40)
                                                       #3  0x00007c5ac409500f _IO_fread (libc.so.6 + 0x7700f)
                                                       #4  0x00007c5ac5d32960 n/a (libmupdf.so + 0x132960)
                                                       #5  0x00007c5ac5ce20d9 n/a (libmupdf.so + 0xe20d9)
                                                       #6  0x00007c5ac5d2fdd5 fz_read (libmupdf.so + 0x12fdd5)
                                                       #7  0x00007c5ac5d45379 n/a (libmupdf.so + 0x145379)
                                                       #8  0x00007c5ac5d45b6c fz_open_tar_archive_with_stream (libmupdf.so + 0x145b6c)
                                                       #9  0x00007c5ac5c8c48e fz_try_open_archive_with_stream (libmupdf.so + 0x8c48e)
                                                       #10 0x00007c5ac5de5390 n/a (libmupdf.so + 0x1e5390)
                                                       #11 0x00007c5ac5c9f91d fz_recognize_document_stream_content (libmupdf.so + 0x9f91d)
                                                       #12 0x00007c5ac5c9fd12 fz_recognize_document_content (libmupdf.so + 0x9fd12)
                                                       #13 0x00007c5ac5c9fd8a fz_open_accelerated_document (libmupdf.so + 0x9fd8a)
                                                       #14 0x0000639ae75f2533 n/a (sioyek + 0x4e533)
                                                       #15 0x00007c5ac42e1943 execute_native_thread_routine (libstdc++.so.6 + 0xe1943)
                                                       #16 0x00007c5ac40a955a n/a (libc.so.6 + 0x8b55a)
                                                       #17 0x00007c5ac4126a3c n/a (libc.so.6 + 0x108a3c)
                                                       
                                                       Stack trace of thread 3543429:
                                                       #0  0x00007c5ac40f2335 clock_nanosleep (libc.so.6 + 0xd4335)
                                                       #1  0x00007c5ac40fd3e7 __nanosleep (libc.so.6 + 0xdf3e7)
                                                       #2  0x0000639ae7665441 n/a (sioyek + 0xc1441)
                                                       #3  0x00007c5ac42e1943 execute_native_thread_routine (libstdc++.so.6 + 0xe1943)
                                                       #4  0x00007c5ac40a955a n/a (libc.so.6 + 0x8b55a)
                                                       #5  0x00007c5ac4126a3c n/a (libc.so.6 + 0x108a3c)
                                                       
                                                       Stack trace of thread 3543431:
                                                       #0  0x00007c5ac40f2335 clock_nanosleep (libc.so.6 + 0xd4335)
                                                       #1  0x00007c5ac40fd3e7 __nanosleep (libc.so.6 + 0xdf3e7)
                                                       #2  0x0000639ae7665441 n/a (sioyek + 0xc1441)
                                                       #3  0x00007c5ac42e1943 execute_native_thread_routine (libstdc++.so.6 + 0xe1943)
                                                       #4  0x00007c5ac40a955a n/a (libc.so.6 + 0x8b55a)
                                                       #5  0x00007c5ac4126a3c n/a (libc.so.6 + 0x108a3c)
                                                       
                                                       Stack trace of thread 3543432:
                                                       #0  0x00007c5ac40f2335 clock_nanosleep (libc.so.6 + 0xd4335)
                                                       #1  0x00007c5ac40fd3e7 __nanosleep (libc.so.6 + 0xdf3e7)
                                                       #2  0x0000639ae7665441 n/a (sioyek + 0xc1441)
                                                       #3  0x00007c5ac42e1943 execute_native_thread_routine (libstdc++.so.6 + 0xe1943)
                                                       #4  0x00007c5ac40a955a n/a (libc.so.6 + 0x8b55a)
                                                       #5  0x00007c5ac4126a3c n/a (libc.so.6 + 0x108a3c)
                                                       
                                                       Stack trace of thread 3543433:
                                                       #0  0x00007c5ac40f2335 clock_nanosleep (libc.so.6 + 0xd4335)
                                                       #1  0x00007c5ac40fd3e7 __nanosleep (libc.so.6 + 0xdf3e7)
                                                       #2  0x0000639ae76646d0 n/a (sioyek + 0xc06d0)
                                                       #3  0x00007c5ac42e1943 execute_native_thread_routine (libstdc++.so.6 + 0xe1943)
                                                       #4  0x00007c5ac40a955a n/a (libc.so.6 + 0x8b55a)
                                                       #5  0x00007c5ac4126a3c n/a (libc.so.6 + 0x108a3c)
                                                       ELF object binary architecture: AMD x86-64

If I open it in terminal I get

default_config_path: /etc/sioyek/prefs.config
default_keys_path: /etc/sioyek/keys.config
user_config_path: [ 0 ] /etc/xdg/sioyek/prefs_user.config
user_config_path: [ 1 ] /home/dale/.config/sioyek/prefs_user.config
user_keys_path: [ 0 ] /etc/xdg/sioyek/keys_user.config
user_keys_path: [ 1 ] /home/dale/.config/sioyek/keys_user.config
database_file_path: /home/dale/.local/share/sioyek/test.db
local_database_file_path: /home/dale/.local/share/sioyek/local.db
global_database_file_path: /home/dale/.local/share/sioyek/shared.db
tutorial_path: /usr/share/sioyek/tutorial.pdf
last_opened_file_address_path: /home/dale/.local/share/sioyek/last_document_path.txt
shader_path: /usr/share/sioyek/shaders
Creating shared memory block...
Shared memory created: this is the primary application.
Starting IPC server...
IPC server started.
Warning: key defined in /etc/sioyek/keys.config:169 overwritten by /home/dale/.config/sioyek/keys_user.config:1
Warning: key defined in /etc/sioyek/keys.config:180 overwritten by /home/dale/.config/sioyek/keys_user.config:5. Overriding command: h: replacing add_highlight with move_right
Warning: key defined in /etc/sioyek/keys.config:280 overwritten by /home/dale/.config/sioyek/keys_user.config:6. Overriding command: l: replacing overview_definition with move_left
Warning: key defined in /etc/sioyek/keys.config:157 overwritten by /home/dale/.config/sioyek/keys_user.config:8
/usr/include/c++/13.2.1/bits/stl_vector.h:1125: std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::operator[](size_type) [with _Tp = int; _Alloc = std::allocator<int>; reference = int&; size_type = long unsigned int]: Assertion '__n < this->size()' failed.
[1]    3579681 IOT instruction (core dumped)  sioyek 

This is the file in question
Zammit_et_al_2017_Electron_and_positron_molecule_scattering_development_of_the_molecular_convergent_close-coupling_method.pdf

[ahrm]

Can't reproduce the issue on windows or ubuntu WSL. I think this might be fixed in the development branch?

[Dale-Muccignat]

I'll try and install the development branch to check, my first attempt was unsuccessful but I need to read up a bit as I might have missed something.

[Dale-Muccignat]

According to the AUR, I have gb312fe0-1 installed, which looks to be the latest commit in the development branch and it still crashes for me. I'm a bit puzzled.