/
clusterseq.graffle
1680 lines (1658 loc) · 39.9 KB
/
clusterseq.graffle
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<string>{{216, 738}, {144, 54}}</string>
<key>Class</key>
<string>ShapedGraphic</string>
<key>ID</key>
<integer>23</integer>
<key>Magnets</key>
<array>
<string>{0, 1}</string>
<string>{0, -1}</string>
<string>{1, 0}</string>
<string>{-1, 0}</string>
</array>
<key>Shape</key>
<string>Rectangle</string>
<key>Style</key>
<dict/>
<key>Text</key>
<dict>
<key>Text</key>
<string>{\rtf1\ansi\ansicpg1252\cocoartf1187
\cocoascreenfonts1{\fonttbl\f0\fswiss\fcharset0 Helvetica;}
{\colortbl;\red255\green255\blue255;}
\pard\tx560\tx1120\tx1680\tx2240\tx2800\tx3360\tx3920\tx4480\tx5040\tx5600\tx6160\tx6720\qc
\f0\fs20 \cf0 Generate cluster names\
(using consensus function)}</string>
<key>VerticalPad</key>
<integer>0</integer>
</dict>
</dict>
<dict>
<key>Bounds</key>
<string>{{216, 648}, {144, 72}}</string>
<key>Class</key>
<string>ShapedGraphic</string>
<key>ID</key>
<integer>43</integer>
<key>Magnets</key>
<array>
<string>{0, 1}</string>
<string>{0, -1}</string>
<string>{1, 0}</string>
<string>{-1, 0}</string>
</array>
<key>Shape</key>
<string>Rectangle</string>
<key>Style</key>
<dict/>
<key>Text</key>
<dict>
<key>Text</key>
<string>{\rtf1\ansi\ansicpg1252\cocoartf1187
\cocoascreenfonts1{\fonttbl\f0\fswiss\fcharset0 Helvetica;}
{\colortbl;\red255\green255\blue255;}
\pard\tx560\tx1120\tx1680\tx2240\tx2800\tx3360\tx3920\tx4480\tx5040\tx5600\tx6160\tx6720\qc
\f0\fs20 \cf0 Identify barcodes to cluster (edit distance to another barcode less than threshold)}</string>
<key>VerticalPad</key>
<integer>0</integer>
</dict>
</dict>
<dict>
<key>Bounds</key>
<string>{{387, 882}, {72, 54}}</string>
<key>Class</key>
<string>ShapedGraphic</string>
<key>ID</key>
<integer>16</integer>
<key>Magnets</key>
<array>
<string>{0, 1}</string>
<string>{0, -1}</string>
<string>{1, 0}</string>
<string>{-1, 0}</string>
</array>
<key>Shape</key>
<string>Cylinder</string>
<key>Style</key>
<dict/>
<key>Text</key>
<dict>
<key>Text</key>
<string>{\rtf1\ansi\ansicpg1252\cocoartf1187
\cocoascreenfonts1{\fonttbl\f0\fswiss\fcharset0 Helvetica;}
{\colortbl;\red255\green255\blue255;}
\pard\tx560\tx1120\tx1680\tx2240\tx2800\tx3360\tx3920\tx4480\tx5040\tx5600\tx6160\tx6720\qc
\f0\fs20 \cf0 Histogram CSV}</string>
<key>VerticalPad</key>
<integer>0</integer>
</dict>
</dict>
<dict>
<key>Bounds</key>
<string>{{396, 810}, {54, 54}}</string>
<key>Class</key>
<string>ShapedGraphic</string>
<key>ID</key>
<integer>15</integer>
<key>Magnets</key>
<array>
<string>{0, 1}</string>
<string>{0, -1}</string>
<string>{1, 0}</string>
<string>{-1, 0}</string>
</array>
<key>Shape</key>
<string>Cylinder</string>
<key>Style</key>
<dict/>
<key>Text</key>
<dict>
<key>Text</key>
<string>{\rtf1\ansi\ansicpg1252\cocoartf1187
\cocoascreenfonts1{\fonttbl\f0\fswiss\fcharset0 Helvetica;}
{\colortbl;\red255\green255\blue255;}
\pard\tx560\tx1120\tx1680\tx2240\tx2800\tx3360\tx3920\tx4480\tx5040\tx5600\tx6160\tx6720\qc
\f0\fs20 \cf0 Filtered CSV}</string>
<key>VerticalPad</key>
<integer>0</integer>
</dict>
</dict>
<dict>
<key>Bounds</key>
<string>{{396, 738}, {54, 54}}</string>
<key>Class</key>
<string>ShapedGraphic</string>
<key>ID</key>
<integer>14</integer>
<key>Magnets</key>
<array>
<string>{0, 1}</string>
<string>{0, -1}</string>
<string>{1, 0}</string>
<string>{-1, 0}</string>
</array>
<key>Shape</key>
<string>Cylinder</string>
<key>Style</key>
<dict/>
<key>Text</key>
<dict>
<key>Text</key>
<string>{\rtf1\ansi\ansicpg1252\cocoartf1187
\cocoascreenfonts1{\fonttbl\f0\fswiss\fcharset0 Helvetica;}
{\colortbl;\red255\green255\blue255;}
\pard\tx560\tx1120\tx1680\tx2240\tx2800\tx3360\tx3920\tx4480\tx5040\tx5600\tx6160\tx6720\qc
\f0\fs20 \cf0 Unfiltered CSV}</string>
<key>VerticalPad</key>
<integer>0</integer>
</dict>
</dict>
<dict>
<key>Class</key>
<string>LineGraphic</string>
<key>Head</key>
<dict>
<key>ID</key>
<integer>40</integer>
</dict>
<key>ID</key>
<integer>42</integer>
<key>Points</key>
<array>
<string>{288, 486}</string>
<string>{288, 504}</string>
</array>
<key>Style</key>
<dict>
<key>stroke</key>
<dict>
<key>HeadArrow</key>
<string>FilledArrow</string>
<key>LineType</key>
<integer>1</integer>
<key>TailArrow</key>
<string>0</string>
</dict>
</dict>
<key>Tail</key>
<dict>
<key>ID</key>
<integer>35</integer>
</dict>
</dict>
<dict>
<key>Bounds</key>
<string>{{216, 504}, {144, 36}}</string>
<key>Class</key>
<string>ShapedGraphic</string>
<key>ID</key>
<integer>40</integer>
<key>Magnets</key>
<array>
<string>{0, 1}</string>
<string>{0, -1}</string>
<string>{1, 0}</string>
<string>{-1, 0}</string>
</array>
<key>Shape</key>
<string>Rectangle</string>
<key>Style</key>
<dict/>
<key>Text</key>
<dict>
<key>Text</key>
<string>{\rtf1\ansi\ansicpg1252\cocoartf1187
\cocoascreenfonts1{\fonttbl\f0\fswiss\fcharset0 Helvetica;}
{\colortbl;\red255\green255\blue255;}
\pard\tx560\tx1120\tx1680\tx2240\tx2800\tx3360\tx3920\tx4480\tx5040\tx5600\tx6160\tx6720\qc
\f0\fs20 \cf0 Generate cluster names using consensus of input barcodes}</string>
<key>VerticalPad</key>
<integer>0</integer>
</dict>
</dict>
<dict>
<key>Class</key>
<string>LineGraphic</string>
<key>Head</key>
<dict>
<key>ID</key>
<integer>12</integer>
<key>Info</key>
<integer>2</integer>
</dict>
<key>ID</key>
<integer>39</integer>
<key>Points</key>
<array>
<string>{288, 540}</string>
<string>{287.5, 558}</string>
</array>
<key>Style</key>
<dict>
<key>stroke</key>
<dict>
<key>HeadArrow</key>
<string>FilledArrow</string>
<key>LineType</key>
<integer>1</integer>
<key>TailArrow</key>
<string>0</string>
</dict>
</dict>
<key>Tail</key>
<dict>
<key>ID</key>
<integer>40</integer>
</dict>
</dict>
<dict>
<key>Class</key>
<string>LineGraphic</string>
<key>Head</key>
<dict>
<key>ID</key>
<integer>13</integer>
</dict>
<key>ID</key>
<integer>38</integer>
<key>Points</key>
<array>
<string>{396, 144}</string>
<string>{432, 144}</string>
</array>
<key>Style</key>
<dict>
<key>stroke</key>
<dict>
<key>HeadArrow</key>
<string>FilledArrow</string>
<key>LineType</key>
<integer>1</integer>
<key>TailArrow</key>
<string>0</string>
</dict>
</dict>
<key>Tail</key>
<dict>
<key>ID</key>
<integer>19</integer>
<key>Info</key>
<integer>3</integer>
</dict>
</dict>
<dict>
<key>Class</key>
<string>LineGraphic</string>
<key>Head</key>
<dict>
<key>ID</key>
<integer>35</integer>
<key>Info</key>
<integer>2</integer>
</dict>
<key>ID</key>
<integer>37</integer>
<key>Points</key>
<array>
<string>{369, 432}</string>
<string>{288, 450}</string>
</array>
<key>Style</key>
<dict>
<key>stroke</key>
<dict>
<key>HeadArrow</key>
<string>FilledArrow</string>
<key>LineType</key>
<integer>1</integer>
<key>TailArrow</key>
<string>0</string>
</dict>
</dict>
<key>Tail</key>
<dict>
<key>ID</key>
<integer>22</integer>
</dict>
</dict>
<dict>
<key>Class</key>
<string>LineGraphic</string>
<key>Head</key>
<dict>
<key>ID</key>
<integer>35</integer>
<key>Info</key>
<integer>2</integer>
</dict>
<key>ID</key>
<integer>36</integer>
<key>Points</key>
<array>
<string>{207, 432}</string>
<string>{288, 450}</string>
</array>
<key>Style</key>
<dict>
<key>stroke</key>
<dict>
<key>HeadArrow</key>
<string>FilledArrow</string>
<key>LineType</key>
<integer>1</integer>
<key>TailArrow</key>
<string>0</string>
</dict>
</dict>
<key>Tail</key>
<dict>
<key>ID</key>
<integer>21</integer>
</dict>
</dict>
<dict>
<key>Bounds</key>
<string>{{216, 450}, {144, 36}}</string>
<key>Class</key>
<string>ShapedGraphic</string>
<key>ID</key>
<integer>35</integer>
<key>Magnets</key>
<array>
<string>{0, 1}</string>
<string>{0, -1}</string>
<string>{1, 0}</string>
<string>{-1, 0}</string>
</array>
<key>Shape</key>
<string>Rectangle</string>
<key>Style</key>
<dict/>
<key>Text</key>
<dict>
<key>Text</key>
<string>{\rtf1\ansi\ansicpg1252\cocoartf1187
\cocoascreenfonts1{\fonttbl\f0\fswiss\fcharset0 Helvetica;}
{\colortbl;\red255\green255\blue255;}
\pard\tx560\tx1120\tx1680\tx2240\tx2800\tx3360\tx3920\tx4480\tx5040\tx5600\tx6160\tx6720\qc
\f0\fs20 \cf0 Generate lists of barcodes for each tag}</string>
<key>VerticalPad</key>
<integer>0</integer>
</dict>
</dict>
<dict>
<key>Class</key>
<string>LineGraphic</string>
<key>Head</key>
<dict>
<key>ID</key>
<integer>20</integer>
</dict>
<key>ID</key>
<integer>34</integer>
<key>Points</key>
<array>
<string>{288, 180}</string>
<string>{288, 198}</string>
</array>
<key>Style</key>
<dict>
<key>stroke</key>
<dict>
<key>HeadArrow</key>
<string>FilledArrow</string>
<key>LineType</key>
<integer>1</integer>
<key>TailArrow</key>
<string>0</string>
</dict>
</dict>
<key>Tail</key>
<dict>
<key>ID</key>
<integer>19</integer>
</dict>
</dict>
<dict>
<key>Class</key>
<string>LineGraphic</string>
<key>Head</key>
<dict>
<key>ID</key>
<integer>21</integer>
</dict>
<key>ID</key>
<integer>31</integer>
<key>Points</key>
<array>
<string>{108.00002, 405}</string>
<string>{135, 405}</string>
</array>
<key>Style</key>
<dict>
<key>stroke</key>
<dict>
<key>HeadArrow</key>
<string>FilledArrow</string>
<key>LineType</key>
<integer>1</integer>
<key>TailArrow</key>
<string>0</string>
</dict>
</dict>
<key>Tail</key>
<dict>
<key>ID</key>
<integer>11</integer>
</dict>
</dict>
<dict>
<key>Class</key>
<string>LineGraphic</string>
<key>Head</key>
<dict>
<key>ID</key>
<integer>3</integer>