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Parser should normalize ref/alt #2

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abought opened this issue Dec 17, 2021 · 0 comments
Open

Parser should normalize ref/alt #2

abought opened this issue Dec 17, 2021 · 0 comments

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@abought
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abought commented Dec 17, 2021

If "ref" and "alt" variants are specified as separate columns, some programs will write those out as quoted strings. The parser should strip those quotes before use, or else we get variants like 1:2_"A"/"C". (this can cause, eg, LD to break because that format is not recognized)
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