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Hello! Many parts of this tutorial “Running Serratus”are confusing to me. Could you be more specific? #259
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Serratus is a large and complex tool and the documentation is a work in progress. If you could explain more about what you're trying to do we'll be glad to help with a configuration that meets your goals. |
Many thanks. |
Hi Nick, sure I'm happy to help. The documentation could use a little bit of updating. Let's start at the beginning of the Running Serratus documentation, please follow these instructions until you reach an instruction which is unclear or not working and we can fix and update the documentation as we go through it. Edit: The caveat here is that as you go through the process, please let me know any steps which you take which are not in the documentation such that I can document them. |
hey @NickShanyt, do you have any feedback for improving the documentation? |
I went through the wiki and got it running (btw: I am software engineer from Amazon volunteer with UBC CIC, so I only know things are running but have no knowledge related to genome) AWS account
ssh -i ~/Downloads/pem/serratus.pem -Nf -L 3000:localhost:3000 -L 9090:localhost:9090 ec2-user@ec2-3-215-88-150.compute-1.amazonaws.com Packer
serratus/terraform/scheduler/main.tf Line 44 in 18486ad
Without changing name I got error for name conflict (I am not sure why ec2 make AMI name global ...
Terraform
serratus/terraform/main/main.tf Lines 49 to 59 in 18486ad
SSH Tunnel
Load SRA
Launch cluster nodes
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:D :D :D This is fantastic @pingleig!! This is a great layout of how to tackle this, issue by issue. If you get a chance can you join the slack: https://join.slack.com/t/hackseq-rna/shared_invite/zt-ewlzh9qf-SiNkxvvTJflcutFN0h5jIQ . I think if we can distill this down and really clean-up the command-line interface and documentation. |
Hello, seraatus is a great tool and I would like to run it on my AWS server. Maybe I don't know enough about it, I think this document is not clear enough and many parts are very confusing. For example, are there folders and files that I need to create manually?
If possible, could you update the documentation with full deployment details and command lines?
Thank you!
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