facenet.py

import os
from subprocess import Popen, PIPE
import tensorflow as tf
import numpy as np
from scipy import misc
from sklearn.model_selection import KFold
from scipy import interpolate
from tensorflow.python.training import training
import random
import re
from tensorflow.python.platform import gfile
import math
from six import iteritems
import cv2

def triplet_loss(anchor, positive, negative, alpha):
    """Calculate the triplet loss according to the FaceNet paper
    
    Args:
      anchor: the embeddings for the anchor images.
      positive: the embeddings for the positive images.
      negative: the embeddings for the negative images.
  
    Returns:
      the triplet loss according to the FaceNet paper as a float tensor.
    """
    with tf.variable_scope('triplet_loss'):
        pos_dist = tf.reduce_sum(tf.square(tf.subtract(anchor, positive)), 1)
        neg_dist = tf.reduce_sum(tf.square(tf.subtract(anchor, negative)), 1)
        
        basic_loss = tf.add(tf.subtract(pos_dist,neg_dist), alpha)
        loss = tf.reduce_mean(tf.maximum(basic_loss, 0.0), 0)
      
    return loss
  
def center_loss(features, label, alfa, nrof_classes):
    """Center loss based on the paper "A Discriminative Feature Learning Approach for Deep Face Recognition"
       (http://ydwen.github.io/papers/WenECCV16.pdf)
    """
    nrof_features = features.get_shape()[1]
    centers = tf.get_variable('centers', [nrof_classes, nrof_features], dtype=tf.float32,
        initializer=tf.constant_initializer(0), trainable=False)
    label = tf.reshape(label, [-1])
    centers_batch = tf.gather(centers, label)
    diff = (1 - alfa) * (centers_batch - features)
    centers = tf.scatter_sub(centers, label, diff)
    with tf.control_dependencies([centers]):
        loss = tf.reduce_mean(tf.square(features - centers_batch))
    return loss, centers

def get_image_paths_and_labels(dataset):
    image_paths_flat = []
    labels_flat = []
    for i in range(len(dataset)):
        image_paths_flat += dataset[i].image_paths
        labels_flat += [i] * len(dataset[i].image_paths)
    return image_paths_flat, labels_flat

def shuffle_examples(image_paths, labels):
    shuffle_list = list(zip(image_paths, labels))
    random.shuffle(shuffle_list)
    image_paths_shuff, labels_shuff = zip(*shuffle_list)
    return image_paths_shuff, labels_shuff

def random_rotate_image(image):
    angle = np.random.uniform(low=-10.0, high=10.0)
    return misc.imrotate(image, angle, 'bicubic')
  
# 1: Random rotate 2: Random crop  4: Random flip  8:  Fixed image standardization  16: Flip
RANDOM_ROTATE = 1
RANDOM_CROP = 2
RANDOM_FLIP = 4
FIXED_STANDARDIZATION = 8
FLIP = 16
def create_input_pipeline(input_queue, image_size, nrof_preprocess_threads, batch_size_placeholder):
    images_and_labels_list = []
    for _ in range(nrof_preprocess_threads):
        filenames, label, control = input_queue.dequeue()
        images = []
        for filename in tf.unstack(filenames):
            file_contents = tf.read_file(filename)
            image = tf.image.decode_image(file_contents, 3)
            image = tf.cond(get_control_flag(control[0], RANDOM_ROTATE),
                            lambda:tf.py_func(random_rotate_image, [image], tf.uint8), 
                            lambda:tf.identity(image))
            image = tf.cond(get_control_flag(control[0], RANDOM_CROP), 
                            lambda:tf.random_crop(image, image_size + (3,)), 
                            lambda:tf.image.resize_image_with_crop_or_pad(image, image_size[0], image_size[1]))
            image = tf.cond(get_control_flag(control[0], RANDOM_FLIP),
                            lambda:tf.image.random_flip_left_right(image),
                            lambda:tf.identity(image))
            image = tf.cond(get_control_flag(control[0], FIXED_STANDARDIZATION),
                            lambda:(tf.cast(image, tf.float32) - 127.5)/128.0,
                            lambda:tf.image.per_image_standardization(image))
            image = tf.cond(get_control_flag(control[0], FLIP),
                            lambda:tf.image.flip_left_right(image),
                            lambda:tf.identity(image))
            #pylint: disable=no-member
            image.set_shape(image_size + (3,))
            images.append(image)
        images_and_labels_list.append([images, label])

    image_batch, label_batch = tf.train.batch_join(
        images_and_labels_list, batch_size=batch_size_placeholder, 
        shapes=[image_size + (3,), ()], enqueue_many=True,
        capacity=4 * nrof_preprocess_threads * 100,
        allow_smaller_final_batch=True)
    
    return image_batch, label_batch

def get_control_flag(control, field):
    return tf.equal(tf.mod(tf.floor_div(control, field), 2), 1)
  
def _add_loss_summaries(total_loss):
    """Add summaries for losses.
  
    Generates moving average for all losses and associated summaries for
    visualizing the performance of the network.
  
    Args:
      total_loss: Total loss from loss().
    Returns:
      loss_averages_op: op for generating moving averages of losses.
    """
    # Compute the moving average of all individual losses and the total loss.
    loss_averages = tf.train.ExponentialMovingAverage(0.9, name='avg')
    losses = tf.get_collection('losses')
    loss_averages_op = loss_averages.apply(losses + [total_loss])
  
    # Attach a scalar summmary to all individual losses and the total loss; do the
    # same for the averaged version of the losses.
    for l in losses + [total_loss]:
        # Name each loss as '(raw)' and name the moving average version of the loss
        # as the original loss name.
        tf.summary.scalar(l.op.name +' (raw)', l)
        tf.summary.scalar(l.op.name, loss_averages.average(l))
  
    return loss_averages_op

def train(total_loss, global_step, optimizer, learning_rate, moving_average_decay, update_gradient_vars, log_histograms=True):
    # Generate moving averages of all losses and associated summaries.
    loss_averages_op = _add_loss_summaries(total_loss)

    # Compute gradients.
    with tf.control_dependencies([loss_averages_op]):
        if optimizer=='ADAGRAD':
            opt = tf.train.AdagradOptimizer(learning_rate)
        elif optimizer=='ADADELTA':
            opt = tf.train.AdadeltaOptimizer(learning_rate, rho=0.9, epsilon=1e-6)
        elif optimizer=='ADAM':
            opt = tf.train.AdamOptimizer(learning_rate, beta1=0.9, beta2=0.999, epsilon=0.1)
        elif optimizer=='RMSPROP':
            opt = tf.train.RMSPropOptimizer(learning_rate, decay=0.9, momentum=0.9, epsilon=1.0)
        elif optimizer=='MOM':
            opt = tf.train.MomentumOptimizer(learning_rate, 0.9, use_nesterov=True)
        else:
            raise ValueError('Invalid optimization algorithm')
    
        grads = opt.compute_gradients(total_loss, update_gradient_vars)
        
    # Apply gradients.
    apply_gradient_op = opt.apply_gradients(grads, global_step=global_step)
  
    # Add histograms for trainable variables.
    if log_histograms:
        for var in tf.trainable_variables():
            tf.summary.histogram(var.op.name, var)
   
    # Add histograms for gradients.
    if log_histograms:
        for grad, var in grads:
            if grad is not None:
                tf.summary.histogram(var.op.name + '/gradients', grad)
  
    # Track the moving averages of all trainable variables.
    variable_averages = tf.train.ExponentialMovingAverage(
        moving_average_decay, global_step)
    variables_averages_op = variable_averages.apply(tf.trainable_variables())
  
    with tf.control_dependencies([apply_gradient_op, variables_averages_op]):
        train_op = tf.no_op(name='train')
  
    return train_op

def prewhiten(x):
    mean = np.mean(x)
    std = np.std(x)
    std_adj = np.maximum(std, 1.0/np.sqrt(x.size))
    y = np.multiply(np.subtract(x, mean), 1/std_adj)
    return y  

def crop(image, random_crop, image_size):
    if image.shape[1]>image_size:
        sz1 = int(image.shape[1]//2)
        sz2 = int(image_size//2)
        if random_crop:
            diff = sz1-sz2
            (h, v) = (np.random.randint(-diff, diff+1), np.random.randint(-diff, diff+1))
        else:
            (h, v) = (0,0)
        image = image[(sz1-sz2+v):(sz1+sz2+v),(sz1-sz2+h):(sz1+sz2+h),:]
    return image
  
def flip(image, random_flip):
    if random_flip and np.random.choice([True, False]):
        image = np.fliplr(image)
    return image

def to_rgb(img):
    w, h = img.shape
    ret = np.empty((w, h, 3), dtype=np.uint8)
    ret[:, :, 0] = ret[:, :, 1] = ret[:, :, 2] = img
    return ret
  
def load_data(image_paths, do_random_crop, do_random_flip, image_size, do_prewhiten=True):
    nrof_samples = len(image_paths)
    images = np.zeros((nrof_samples, image_size, image_size, 3))
    for i in range(nrof_samples):
        img = cv2.imread(image_paths[i])
        if img.ndim == 2:
            img = to_rgb(img)
        if do_prewhiten:
            img = prewhiten(img)
        img = crop(img, do_random_crop, image_size)
        img = flip(img, do_random_flip)
        images[i,:,:,:] = img
    return images

def get_label_batch(label_data, batch_size, batch_index):
    nrof_examples = np.size(label_data, 0)
    j = batch_index*batch_size % nrof_examples
    if j+batch_size<=nrof_examples:
        batch = label_data[j:j+batch_size]
    else:
        x1 = label_data[j:nrof_examples]
        x2 = label_data[0:nrof_examples-j]
        batch = np.vstack([x1,x2])
    batch_int = batch.astype(np.int64)
    return batch_int

def get_batch(image_data, batch_size, batch_index):
    nrof_examples = np.size(image_data, 0)
    j = batch_index*batch_size % nrof_examples
    if j+batch_size<=nrof_examples:
        batch = image_data[j:j+batch_size,:,:,:]
    else:
        x1 = image_data[j:nrof_examples,:,:,:]
        x2 = image_data[0:nrof_examples-j,:,:,:]
        batch = np.vstack([x1,x2])
    batch_float = batch.astype(np.float32)
    return batch_float

def get_triplet_batch(triplets, batch_index, batch_size):
    ax, px, nx = triplets
    a = get_batch(ax, int(batch_size/3), batch_index)
    p = get_batch(px, int(batch_size/3), batch_index)
    n = get_batch(nx, int(batch_size/3), batch_index)
    batch = np.vstack([a, p, n])
    return batch

def get_learning_rate_from_file(filename, epoch):
    with open(filename, 'r') as f:
        for line in f.readlines():
            line = line.split('#', 1)[0]
            if line:
                par = line.strip().split(':')
                e = int(par[0])
                if par[1]=='-':
                    lr = -1
                else:
                    lr = float(par[1])
                if e <= epoch:
                    learning_rate = lr
                else:
                    return learning_rate

class ImageClass():
    "Stores the paths to images for a given class"
    def __init__(self, name, image_paths):
        self.name = name
        self.image_paths = image_paths
  
    def __str__(self):
        return self.name + ', ' + str(len(self.image_paths)) + ' images'
  
    def __len__(self):
        return len(self.image_paths)
  
def get_dataset(path, has_class_directories=True):
    dataset = []
    path_exp = os.path.expanduser(path)
    classes = [path for path in os.listdir(path_exp) \
                    if os.path.isdir(os.path.join(path_exp, path))]
    classes.sort()
    nrof_classes = len(classes)
    for i in range(nrof_classes):
        class_name = classes[i]
        facedir = os.path.join(path_exp, class_name)
        image_paths = get_image_paths(facedir)
        dataset.append(ImageClass(class_name, image_paths))
  
    return dataset

def get_image_paths(facedir):
    image_paths = []
    if os.path.isdir(facedir):
        images = os.listdir(facedir)
        image_paths = [os.path.join(facedir,img) for img in images]
    return image_paths
  
def split_dataset(dataset, split_ratio, min_nrof_images_per_class, mode):
    if mode=='SPLIT_CLASSES':
        nrof_classes = len(dataset)
        class_indices = np.arange(nrof_classes)
        np.random.shuffle(class_indices)
        split = int(round(nrof_classes*(1-split_ratio)))
        train_set = [dataset[i] for i in class_indices[0:split]]
        test_set = [dataset[i] for i in class_indices[split:-1]]
    elif mode=='SPLIT_IMAGES':
        train_set = []
        test_set = []
        for cls in dataset:
            paths = cls.image_paths
            np.random.shuffle(paths)
            nrof_images_in_class = len(paths)
            split = int(math.floor(nrof_images_in_class*(1-split_ratio)))
            if split==nrof_images_in_class:
                split = nrof_images_in_class-1
            if split>=min_nrof_images_per_class and nrof_images_in_class-split>=1:
                train_set.append(ImageClass(cls.name, paths[:split]))
                test_set.append(ImageClass(cls.name, paths[split:]))
    else:
        raise ValueError('Invalid train/test split mode "%s"' % mode)
    return train_set, test_set

def load_model(model, input_map=None):
    # Check if the model is a model directory (containing a metagraph and a checkpoint file)
    #  or if it is a protobuf file with a frozen graph
    model_exp = os.path.expanduser(model)
    if (os.path.isfile(model_exp)):
        print('Model filename: %s' % model_exp)
        with gfile.FastGFile(model_exp,'rb') as f:
            graph_def = tf.GraphDef()
            graph_def.ParseFromString(f.read())
            tf.import_graph_def(graph_def, input_map=input_map, name='')
    else:
        print('Model directory: %s' % model_exp)
        meta_file, ckpt_file = get_model_filenames(model_exp)
        
        print('Metagraph file: %s' % meta_file)
        print('Checkpoint file: %s' % ckpt_file)
      
        saver = tf.train.import_meta_graph(os.path.join(model_exp, meta_file), input_map=input_map)
        saver.restore(tf.get_default_session(), os.path.join(model_exp, ckpt_file))
    
def get_model_filenames(model_dir):
    files = os.listdir(model_dir)
    meta_files = [s for s in files if s.endswith('.meta')]
    if len(meta_files)==0:
        raise ValueError('No meta file found in the model directory (%s)' % model_dir)
    elif len(meta_files)>1:
        raise ValueError('There should not be more than one meta file in the model directory (%s)' % model_dir)
    meta_file = meta_files[0]
    ckpt = tf.train.get_checkpoint_state(model_dir)
    if ckpt and ckpt.model_checkpoint_path:
        ckpt_file = os.path.basename(ckpt.model_checkpoint_path)
        return meta_file, ckpt_file

    meta_files = [s for s in files if '.ckpt' in s]
    max_step = -1
    for f in files:
        step_str = re.match(r'(^model-[\w\- ]+.ckpt-(\d+))', f)
        if step_str is not None and len(step_str.groups())>=2:
            step = int(step_str.groups()[1])
            if step > max_step:
                max_step = step
                ckpt_file = step_str.groups()[0]
    return meta_file, ckpt_file
  
def distance(embeddings1, embeddings2, distance_metric=0):
    if distance_metric==0:
        # Euclidian distance
        diff = np.subtract(embeddings1, embeddings2)
        dist = np.sum(np.square(diff),1)
    elif distance_metric==1:
        # Distance based on cosine similarity
        dot = np.sum(np.multiply(embeddings1, embeddings2), axis=1)
        norm = np.linalg.norm(embeddings1, axis=1) * np.linalg.norm(embeddings2, axis=1)
        similarity = dot / norm
        dist = np.arccos(similarity) / math.pi
    else:
        raise 'Undefined distance metric %d' % distance_metric 
        
    return dist

def calculate_roc(thresholds, embeddings1, embeddings2, actual_issame, nrof_folds=10, distance_metric=0, subtract_mean=False):
    assert(embeddings1.shape[0] == embeddings2.shape[0])
    assert(embeddings1.shape[1] == embeddings2.shape[1])
    nrof_pairs = min(len(actual_issame), embeddings1.shape[0])
    nrof_thresholds = len(thresholds)
    k_fold = KFold(n_splits=nrof_folds, shuffle=False)
    
    tprs = np.zeros((nrof_folds,nrof_thresholds))
    fprs = np.zeros((nrof_folds,nrof_thresholds))
    accuracy = np.zeros((nrof_folds))
    
    indices = np.arange(nrof_pairs)
    
    for fold_idx, (train_set, test_set) in enumerate(k_fold.split(indices)):
        if subtract_mean:
            mean = np.mean(np.concatenate([embeddings1[train_set], embeddings2[train_set]]), axis=0)
        else:
          mean = 0.0
        dist = distance(embeddings1-mean, embeddings2-mean, distance_metric)
        
        # Find the best threshold for the fold
        acc_train = np.zeros((nrof_thresholds))
        for threshold_idx, threshold in enumerate(thresholds):
            _, _, acc_train[threshold_idx] = calculate_accuracy(threshold, dist[train_set], actual_issame[train_set])
        best_threshold_index = np.argmax(acc_train)
        for threshold_idx, threshold in enumerate(thresholds):
            tprs[fold_idx,threshold_idx], fprs[fold_idx,threshold_idx], _ = calculate_accuracy(threshold, dist[test_set], actual_issame[test_set])
        _, _, accuracy[fold_idx] = calculate_accuracy(thresholds[best_threshold_index], dist[test_set], actual_issame[test_set])
          
        tpr = np.mean(tprs,0)
        fpr = np.mean(fprs,0)
    return tpr, fpr, accuracy

def calculate_accuracy(threshold, dist, actual_issame):
    predict_issame = np.less(dist, threshold)
    tp = np.sum(np.logical_and(predict_issame, actual_issame))
    fp = np.sum(np.logical_and(predict_issame, np.logical_not(actual_issame)))
    tn = np.sum(np.logical_and(np.logical_not(predict_issame), np.logical_not(actual_issame)))
    fn = np.sum(np.logical_and(np.logical_not(predict_issame), actual_issame))
  
    tpr = 0 if (tp+fn==0) else float(tp) / float(tp+fn)
    fpr = 0 if (fp+tn==0) else float(fp) / float(fp+tn)
    acc = float(tp+tn)/dist.size
    return tpr, fpr, acc


  
def calculate_val(thresholds, embeddings1, embeddings2, actual_issame, far_target, nrof_folds=10, distance_metric=0, subtract_mean=False):
    assert(embeddings1.shape[0] == embeddings2.shape[0])
    assert(embeddings1.shape[1] == embeddings2.shape[1])
    nrof_pairs = min(len(actual_issame), embeddings1.shape[0])
    nrof_thresholds = len(thresholds)
    k_fold = KFold(n_splits=nrof_folds, shuffle=False)
    
    val = np.zeros(nrof_folds)
    far = np.zeros(nrof_folds)
    
    indices = np.arange(nrof_pairs)
    
    for fold_idx, (train_set, test_set) in enumerate(k_fold.split(indices)):
        if subtract_mean:
            mean = np.mean(np.concatenate([embeddings1[train_set], embeddings2[train_set]]), axis=0)
        else:
          mean = 0.0
        dist = distance(embeddings1-mean, embeddings2-mean, distance_metric)
      
        # Find the threshold that gives FAR = far_target
        far_train = np.zeros(nrof_thresholds)
        for threshold_idx, threshold in enumerate(thresholds):
            _, far_train[threshold_idx] = calculate_val_far(threshold, dist[train_set], actual_issame[train_set])
        if np.max(far_train)>=far_target:
            f = interpolate.interp1d(far_train, thresholds, kind='slinear')
            threshold = f(far_target)
        else:
            threshold = 0.0
    
        val[fold_idx], far[fold_idx] = calculate_val_far(threshold, dist[test_set], actual_issame[test_set])
  
    val_mean = np.mean(val)
    far_mean = np.mean(far)
    val_std = np.std(val)
    return val_mean, val_std, far_mean


def calculate_val_far(threshold, dist, actual_issame):
    predict_issame = np.less(dist, threshold)
    true_accept = np.sum(np.logical_and(predict_issame, actual_issame))
    false_accept = np.sum(np.logical_and(predict_issame, np.logical_not(actual_issame)))
    n_same = np.sum(actual_issame)
    n_diff = np.sum(np.logical_not(actual_issame))
    val = float(true_accept) / float(n_same)
    far = float(false_accept) / float(n_diff)
    return val, far

def store_revision_info(src_path, output_dir, arg_string):
    try:
        # Get git hash
        cmd = ['git', 'rev-parse', 'HEAD']
        gitproc = Popen(cmd, stdout = PIPE, cwd=src_path)
        (stdout, _) = gitproc.communicate()
        git_hash = stdout.strip()
    except OSError as e:
        git_hash = ' '.join(cmd) + ': ' +  e.strerror
  
    try:
        # Get local changes
        cmd = ['git', 'diff', 'HEAD']
        gitproc = Popen(cmd, stdout = PIPE, cwd=src_path)
        (stdout, _) = gitproc.communicate()
        git_diff = stdout.strip()
    except OSError as e:
        git_diff = ' '.join(cmd) + ': ' +  e.strerror
    
    # Store a text file in the log directory
    rev_info_filename = os.path.join(output_dir, 'revision_info.txt')
    with open(rev_info_filename, "w") as text_file:
        text_file.write('arguments: %s\n--------------------\n' % arg_string)
        text_file.write('tensorflow version: %s\n--------------------\n' % tf.__version__)  # @UndefinedVariable
        text_file.write('git hash: %s\n--------------------\n' % git_hash)
        text_file.write('%s' % git_diff)

def list_variables(filename):
    reader = training.NewCheckpointReader(filename)
    variable_map = reader.get_variable_to_shape_map()
    names = sorted(variable_map.keys())
    return names

def put_images_on_grid(images, shape=(16,8)):
    nrof_images = images.shape[0]
    img_size = images.shape[1]
    bw = 3
    img = np.zeros((shape[1]*(img_size+bw)+bw, shape[0]*(img_size+bw)+bw, 3), np.float32)
    for i in range(shape[1]):
        x_start = i*(img_size+bw)+bw
        for j in range(shape[0]):
            img_index = i*shape[0]+j
            if img_index>=nrof_images:
                break
            y_start = j*(img_size+bw)+bw
            img[x_start:x_start+img_size, y_start:y_start+img_size, :] = images[img_index, :, :, :]
        if img_index>=nrof_images:
            break
    return img

def write_arguments_to_file(args, filename):
    with open(filename, 'w') as f:
        for key, value in iteritems(vars(args)):
            f.write('%s: %s\n' % (key, str(value)))