From 4a3b725ff5dd01bc7f74b9cdacd2991a62e71cb1 Mon Sep 17 00:00:00 2001
From: kierandidi <kieran.didi@gmail.com>
Date: Tue, 23 Apr 2024 14:58:59 +0100
Subject: [PATCH] [cleanup] change logging levels to debug to declutter output

---
 graphein/protein/features/sequence/embeddings.py | 4 ++--
 graphein/protein/meshes.py                       | 2 +-
 graphein/protein/tensor/representation.py        | 2 +-
 graphein/protein/tensor/sequence.py              | 2 +-
 graphein/protein/visualisation.py                | 3 ++-
 5 files changed, 7 insertions(+), 6 deletions(-)

diff --git a/graphein/protein/features/sequence/embeddings.py b/graphein/protein/features/sequence/embeddings.py
index 914bcf85..31f6d5f8 100644
--- a/graphein/protein/features/sequence/embeddings.py
+++ b/graphein/protein/features/sequence/embeddings.py
@@ -31,7 +31,7 @@
         pip_install=True,
         conda_channel="pytorch",
     )
-    log.warning(message)
+    log.debug(message)
 
 try:
     import biovec
@@ -42,7 +42,7 @@
         pip_install=True,
         extras=True,
     )
-    log.warning(message)
+    log.debug(message)
 
 
 @lru_cache()
diff --git a/graphein/protein/meshes.py b/graphein/protein/meshes.py
index a37d2b0f..1f8fc7c4 100644
--- a/graphein/protein/meshes.py
+++ b/graphein/protein/meshes.py
@@ -27,7 +27,7 @@
         conda_channel="pytorch3d",
         pip_install=True,
     )
-    log.warning(message)
+    log.debug(message)
 
 
 def check_for_pymol_installation():
diff --git a/graphein/protein/tensor/representation.py b/graphein/protein/tensor/representation.py
index 5bbf1426..59b4e873 100644
--- a/graphein/protein/tensor/representation.py
+++ b/graphein/protein/tensor/representation.py
@@ -24,7 +24,7 @@
         conda_channel="pytorch",
         pip_install=True,
     )
-    log.warning(message)
+    log.debug(message)
 
 
 def get_full_atom_coords(
diff --git a/graphein/protein/tensor/sequence.py b/graphein/protein/tensor/sequence.py
index 5f53c0e7..8231a04e 100644
--- a/graphein/protein/tensor/sequence.py
+++ b/graphein/protein/tensor/sequence.py
@@ -31,7 +31,7 @@
         conda_channel="pytorch",
         pip_install=True,
     )
-    log.warning(message)
+    log.debug(message)
 
 
 def get_sequence(
diff --git a/graphein/protein/visualisation.py b/graphein/protein/visualisation.py
index d02bd8dd..c87bcbac 100644
--- a/graphein/protein/visualisation.py
+++ b/graphein/protein/visualisation.py
@@ -33,7 +33,7 @@
         package="pytorch3d",
         conda_channel="pytorch3d",
     )
-    log.warning(message)
+    log.debug(message)
 
 try:
     from mpl_chord_diagram import chord_diagram
@@ -44,6 +44,7 @@
         pip_install=True,
         extras=True,
     )
+    log.debug(message)
 
 
 def plot_pointcloud(mesh: Meshes, title: str = "") -> Axes3D: