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File inter.hic cannot be opened #16

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Luzmist opened this issue Jan 30, 2024 · 0 comments
Open

File inter.hic cannot be opened #16

Luzmist opened this issue Jan 30, 2024 · 0 comments

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@Luzmist
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Luzmist commented Jan 30, 2024

Hello! I'm attempting to convert the format from Hi-C (Juicer output) to Cooler using HiCLift:
HiCLift --input inter_30.hic --input-format juicer --out-pre CN-10 --output-format cooler --out-chromsizes sizes.genome --in-assembly hg38 --out-assembly hg38 --memory 40G .
However, I encountered the following error: File doesn't have the given chr_chr map 137_270
File inter_30.hic cannot be opened for reading

This are the chromosome names in my inter.hic file:
NC_000001.11
NT_187361.1 ,
NT_187362.1
NT_187363.1

How can I solve this ?

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