/
wrfgc_io_pnetcdf.F
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wrfgc_io_pnetcdf.F
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module wrfgc_io_pnetcdf
use mpi
use pnetcdf
! WRF
use module_domain_type, only: domain
use module_utility
use module_date_time
! GC
use GC_Stateful_Mod, only: Global_DiagList, Global_Input_Opt,Global_HcoConfig
use PRECISION_MOD
use Input_Opt_Mod, only: OptInput
use State_Chm_Mod, only: ChmState
use State_Met_Mod, only: MetState
use State_Diag_Mod, only: DgnState, Get_TagInfo, Get_NameInfo
use State_Grid_Mod, only: GrdState
USE Grid_Registry_Mod, ONLY : Lookup_Grid
use Registry_Mod
use registry_params_mod
use Charpak_Mod
use ERROR_MOD
use MetaHistContainer_Mod, ONLY: MetaHistContainer
USE HistContainer_Mod, ONLY : HistContainer
USE MetaHistItem_Mod
USE HistItem_Mod, ONLY : HistItem
! HEMCO
USE HCO_TYPES_MOD, ONLY : DiagnCollection, DiagnCont, DiagnBundle, ConfigObj
use HCO_Interface_Common, only : GetHcoDiagn
use HCO_State_GC_Mod, only : HcoState, ExtState
! WRF-GC
use WRFGC_History_Mod, only: CollectionList, CollectionCount, IndexVariables
! use DiagList_Mod, ONLY : CollList, ColItem, DgnList, DgnItem
implicit none
INTEGER, PUBLIC, PARAMETER :: GC_SUCCESS = 0 ! Routine returns success
INTEGER, PUBLIC, PARAMETER :: GC_FAILURE = -1 ! Routine returns failure
CHARACTER(LEN=9), PARAMETER, PUBLIC :: UNDEFINED_STR = 'not found'
public :: writeDiag
contains
subroutine check(err, message)
use mpi
use pnetcdf
implicit none
integer :: err
character(len=*) :: message
! It is a good idea to check returned value for possible error
if (err .NE. NF90_NOERR) then
write(*,*)'error: something wrong ', trim(message)
write(6,*) trim(message), " ",trim(nf90mpi_strerror(err))
call MPI_Abort(MPI_COMM_WORLD, -1, err)
end if
end subroutine check
subroutine construct_filename(time_str, filenametemplate1, filename, domainName)
character(len=*), intent(in) :: time_str, filenametemplate1, domainName
character(len=*), intent(out) :: filename
character :: c
character(len=5) :: cs
integer :: i, start, end, ifilename
character(len=255) :: filenametemplate
filename = 'not'
filenametemplate = filenametemplate1
start = 0
end = 0
ifilename = 1
do i = 1, 5
start = index(filenametemplate, "%")
if (start > 0) then
! copy the string before the %
filename(ifilename:ifilename+start-end-1) = filenametemplate(end+1:start-1)
ifilename = ifilename + start - end -1
! copy the string after the %
if (filenametemplate(start+2:start+2) == "2") then
end = start + 2
select case(filenametemplate(start+1:start+1))
case('m')
filename(ifilename:ifilename+1) = time_str(6:7)
case('d')
filename(ifilename: ifilename+1) = time_str(9:10)
case('h')
filename(ifilename:ifilename+1) = time_str(12:13)
case('n')
filename(ifilename:ifilename+1) = time_str(15:16)
end select
ifilename = ifilename + 2
else
filename(ifilename: ifilename+3) = time_str(1:4)
end = start + 2
ifilename = ifilename + 4
end if
filenametemplate(start:start) = '_'
end if
end do
filename(ifilename:ifilename+len_trim(filenametemplate)-end) = filenametemplate(end+1:len_trim(filenametemplate))
filename = trim(domainName)//filename
endsubroutine construct_filename
subroutine checkgc(RC, message)
use mpi
implicit none
integer :: RC
character(len=*) :: message
! It is a good idea to check returned value for possible error
if (RC .NE. GC_SUCCESS) then
call MPI_Abort(MPI_COMM_WORLD, -1, RC)
end if
end subroutine checkgc
subroutine writeDiag(debug_level, Input_Opt, State_Met, State_Chm, grid, State_Grid, State_Diag, its, ite, jts, jte, ide, jde, kte)
USE GC_Stateful_Mod, ONLY : GIGC_States
type(OptInput), intent(inout) :: Input_Opt
type(MetState), intent(inout) :: State_Met
type(ChmState), intent(inout) :: State_Chm
type(GrdState), intent(inout) :: State_Grid
type(DgnState), intent(in) :: State_Diag
type(domain), target :: grid
integer(kind=MPI_OFFSET_KIND):: i, time_index, time_count
integer, intent(in)::debug_level
INTEGER:: RC, N ! Success or failure?
integer :: time_unixs(1), dimensions(3)
integer(kind=MPI_OFFSET_KIND), intent(in) :: ide, jde, kte, its, ite, jts, jte
integer :: ncid, ierr, dimids(8), xtimei, varid, time_unix, nTags, year, month, day, hour, minute, second, time_interval
character(len=50) :: filename, time_unix_start
real :: xtime
type(WRFU_Clock) :: clock
TYPE(WRFU_Time) :: currTime, startTime, stopTime, referenceTimem, time
TYPE(WRFU_TimeInterval) :: timeStep
CHARACTER (LEN=64) :: currTime_str, startTime_str, stopTime_str, filename_time_str, time_str
CHARACTER (LEN=19) :: referenceTime_str, new_referenceTime_str
CHARACTER (LEN=64) :: diag_name, state_name
integer, dimension(2) :: s
type(MetaRegItem), pointer:: current_reg
! type(DgnItem), pointer :: current_diag
character(len=255) :: ItemTemplate, ItemName, ItemTemplateUC, ItemNameUC, ItemPrefix,SubStrs(255), tagId, &
tagName, ErrMsg, OutputName, Description, Units
character(len=80) :: ErrorLine
character(len=5) :: StateMetUC, StateChmUC, domainName
logical :: Found
type(HistContainer) , POINTER:: Current_container
type(MetaHistContainer), POINTER :: Current_metahistcontainer
type(HistItem), POINTER :: Current_Item
type(MetaHistItem), POINTER :: Current_metahistitem
REAL(f8), POINTER :: Grid_Lat (: )
REAL(f8), POINTER :: Grid_LatE(: )
REAL(f8), POINTER :: Grid_Lon (: )
REAL(f8), POINTER :: Grid_LonE(: )
REAL(f8), POINTER :: Source_0d_8 ! Ptr to 0D 8-byte data
REAL(f4), pointer :: Source_0d_4 ! Ptr to 0D 4-byte data
INTEGER, POINTER :: Source_0d_I ! Ptr to 0D integer data
REAL(f8), POINTER :: Source_1d_8(: ) ! Ptr to 1D 8-byte data
REAL(f4), POINTER :: Source_1d_4(: ) ! Ptr to 1D 4-byte data
INTEGER, POINTER :: Source_1d_I(: ) ! Ptr to 1D integer data
REAL(f8), POINTER :: Source_2d_8(:,: ) ! Ptr to 2D 8-byte data
REAL(f4), POINTER :: Source_2d_4(:,: ) ! Ptr to 2D 4-byte data
INTEGER, POINTER :: Source_2d_I(:,: ) ! Ptr to 2D integer data
REAL(f8), POINTER :: Source_3d_8(:,:,:) ! Ptr to 3D 8-byte data
REAL(f4), POINTER :: Source_3d_4(:,:,:) ! Ptr to 3D 4-byte data
INTEGER, POINTER :: Source_3d_I(:,:,:) ! Ptr to 3D integer data
REAL(f8), POINTER :: Data_0d ! 0D scalar
REAL(f8), POINTER :: Data_1d(: ) ! 1D vector
REAL(f8), POINTER :: Data_2d(:,: ) ! 2D array
REAL(f8), POINTER :: Data_3d(:,:,:) ! 3D array
REAL :: T1, T2 ! for measuring exctuion time
! for hemco
type(DiagnCollection), pointer :: hco_collection
type(DiagnCont), pointer :: hco_diag
logical :: do_diagn_now
integer :: delta_s
Source_0d_8 => NULL()
Source_1d_8 => NULL()
Source_1d_4 => NULL()
Source_1d_I => NULL()
Source_2d_8 => NULL()
Source_2d_4 => NULL()
Source_2d_I => NULL()
Source_3d_8 => NULL()
Source_3d_4 => NULL()
Source_3d_I => NULL()
Data_0d => NULL()
Data_1d => NULL()
Data_2d => NULL()
Data_3d => NULL()
RC = GC_SUCCESS
! do nothing if function called from chemics_init.F
if (.not. associated(GIGC_States(grid%id)%HcoState))then
return
endif
if (debug_level .gt. 200)then
write(*,*) 'The current output domain: ',State_Grid%ID, grid%id;
endif
write(domainName, '(A,I2.2)'), 'd', grid%id;
! get time
clock = grid%domain_clock
CALL WRFU_ClockGet( clock, CurrTime=currTime, StartTime=startTime, &
StopTime=stopTime, TimeStep=timeStep, rc=rc )
call wrf_timetoa( startTime, startTime_str )
call wrf_timetoa( currTime, currTime_str )
call wrf_timetoa( stopTime, stopTime_str )
xtime = grid%xtime
! get filename
! use wrf history interval as output interval
xtimei = int(xtime/grid%history_interval)
write(*,*)'before get collection, line 241'
! write hemco diagnostic
hco_collection => GIGC_States(State_Grid%id)%HcoState%Diagn%Collections
write(*,*)'after get collection, line 245'
do while(associated(hco_collection))
do_diagn_now = .False.
if (debug_level .ge. 500) then
write(*,*)'write hemco diagn: ', trim(hco_collection%PREFIX)
write(*,*)'frequency: ',hco_collection%deltaYMD, hco_collection%deltaHMS
endif
if ((hco_collection%deltaHMS == 1 .and. hco_collection%deltaYMD == 0) .or. hco_collection%deltaYMD == -1)then
! always output
do_diagn_now = .True.
write(filename, *)trim(hco_collection%PREFIX),"_",trim(domainName), "_", currTime_str(1:4),'_',currTime_str(6:7),"_", currTime_str(9:10),currTime_str(12:13),currTime_str(15:16), currTime_str(18:19), '.nc'
else if (hco_collection%lastYMD == -1)then
! first time output, using start time and update lastymd
do_diagn_now = .True.
read(startTime_str(1:4), *) year
read(startTime_str(6:7), *) month
read(startTime_str(9:10), *) day
read(startTime_str(12:13), *) hour
read(startTime_str(15:16), *) minute
read(startTime_str(18:19), *) second
write(filename, *)trim(hco_collection%PREFIX),"_",trim(domainName), "_", startTime_str(1:4),'_',currTime_str(6:7),"_", currTime_str(9:10),currTime_str(12:13),currTime_str(15:16), currTime_str(18:19), '.nc'
hco_collection%lastYMD = year*10000 + month*100 + day
hco_collection%lastHms = hour*10000 + minute*100 + second
else
! if interval > time interval, output and update lastymd
year = hco_collection%lastYMD / 10000
month = (hco_collection%lastYMD - year*10000) / 100
day = hco_collection%lastYMD - year*10000 - month*100
hour = hco_collection%lastHms / 10000
minute = (hco_collection%lastHms - hour*10000) / 100
second = hco_collection%lastHms - hour*10000 - minute*100
write(referenceTime_str,'(I4.4, "-", I2.2, "-", I2.2, " ", I2.2, ":", I2.2, ":", I2.2)') year, month, day, hour, minute, second
call geth_idts(currTime_str(1:19), referenceTime_str(1:19), time_interval)
year = hco_collection%deltaYMD / 10000
month = (hco_collection%deltaYMD - year*10000) /100
day = hco_collection%deltaYMD - year*10000 - month*100
hour = hco_collection%deltaHms / 10000
minute = (hco_collection%deltaHms - hour*10000) / 100
second = hco_collection%deltaHms - hour*10000 - minute*100
delta_s = year*365*24*60*60 + month*30*24*60*60 + day*24*60*60 + hour*60*60 + minute*60 + second
if (time_interval > delta_s) then
do_diagn_now = .True.
call geth_newdate(new_referenceTime_str, referenceTime_str, delta_s)
read(new_referenceTime_str(1:4), *) year
read(new_referenceTime_str(6:7), *) month
read(new_referenceTime_str(9:10), *) day
read(new_referenceTime_str(12:13), *) hour
read(new_referenceTime_str(15:16), *) minute
read(new_referenceTime_str(18:19), *) second
write(filename, *)trim(hco_collection%PREFIX),"_",trim(domainName), "_", new_referenceTime_str(1:4),'_',new_referenceTime_str(6:7),"_", new_referenceTime_str(9:10),new_referenceTime_str(12:13),new_referenceTime_str(15:16), new_referenceTime_str(18:19), '.nc'
hco_collection%lastYMD = year*10000 + month*100 + day
hco_collection%lastHms = hour*10000 + minute*100 + second
else if (time_interval<11*60)then
! if interval < 11 minutes, output
do_diagn_now = .True.
write(filename, *)trim(hco_collection%PREFIX),"_",trim(domainName), "_", stopTime_str(1:4),'_',stopTime_str(6:7),"_", stopTime_str(9:10),stopTime_str(12:13),stopTime_str(15:16), stopTime_str(18:19), '.nc'
ENDIF
endif
! do_diagn_now = .False.
! ! last time = -1
! if (hco_collection%lastYMD == -1) do_diagn_now = .True.
! if (hco_collection%deltaYMD == -1) do_diagn_now = .True.
! call geth_idts(stopTime_str(1:19), currTime_str(1:19), time_interval)
! ! if reach end of simulation, do diagn
! if (time_interval<11*60) do_diagn_now = .True.
! ! if current time - last time > delta time
! if ( .not. do_diagn_now)then
! year = hco_collection%lastYMD / 10000
! month = (hco_collection%lastYMD - year*10000) / 100
! day = hco_collection%lastYMD - year*10000 - month*100
! hour = hco_collection%lastHms / 10000
! minute = (hco_collection%lastHms - hour*10000) / 100
! second = hco_collection%lastHms - hour*10000 - minute*100
! write(referenceTime_str,&
! '(I4.4, "-", I2.2, "-", I2.2, " ", I2.2, ":", I2.2, ":", I2.2)'&
! ) year, month, day, hour, minute, second
! call geth_idts(currTime_str(1:19), referenceTime_str(1:19), time_interval)
! ! convert deltaymd and deltahms to second
! year = hco_collection%deltaYMD / 10000
! month = (hco_collection%deltaYMD - year*10000) /100
! day = hco_collection%deltaYMD - year*10000 - month*100
! hour = hco_collection%deltaHms / 10000
! minute = (hco_collection%deltaHms - hour*10000) / 100
! second = hco_collection%deltaHms - hour*10000 - minute*100
! delta_s = year*365*24*60*60 + month*30*24*60*60 + day*24*60*60 + hour*60*60 + minute*60 + second
! if (time_interval > delta_s) do_diagn_now = .True.
! endif
T1 = MPI_Wtime()
if ( do_diagn_now )then
! ! write(*,* )'wrfgc_io_pnetcdf: write hemco diagn.'
! ! update lastymd and last hms
! if (hco_collection%deltaYMD == -1)then
! ! always output
! write(filename, *)trim(hco_collection%PREFIX), "_", currTime_str(1:4),'_',currTime_str(6:7),"_", currTime_str(9:10),currTime_str(12:13),currTime_str(15:16), currTime_str(18:19), '.nc'
! else if (hco_collection%lastYMD == -1)then
! read(startTime_str(1:4), *) year
! read(startTime_str(6:7), *) month
! read(startTime_str(9:10), *) day
! read(startTime_str(12:13), *) hour
! read(startTime_str(15:16), *) minute
! read(startTime_str(18:19), *) second
! write(filename, *)trim(hco_collection%PREFIX), "_", startTime_str(1:4),'_',currTime_str(6:7),"_", currTime_str(9:10),currTime_str(12:13),currTime_str(15:16), currTime_str(18:19), '.nc'
! else if (time_interval<11*60)then
! write(filename, *)trim(hco_collection%PREFIX), "_", stopTime_str(1:4),'_',stopTime_str(6:7),"_", stopTime_str(9:10),stopTime_str(12:13),stopTime_str(15:16), stopTime_str(18:19), '.nc'
! else
! ! convert deltaymd and deltahms to second
! year = hco_collection%deltaYMD / 10000
! month = (hco_collection%deltaYMD - year*10000) /100
! day = hco_collection%deltaYMD - year*10000 - month*100
! hour = hco_collection%deltaHms / 10000
! minute = (hco_collection%deltaHms - hour*10000) / 100
! second = hco_collection%deltaHms - hour*10000 - minute*100
! delta_s = year*365*24*60*60 + month*30*24*60*60 + day*24*60*60 + hour*60*60 + minute*60 + second
! year = hco_collection%lastYMD / 10000
! month = (hco_collection%lastYMD - year*10000) / 100
! day = hco_collection%lastYMD - year*10000 - month*100
! hour = hco_collection%lastHms / 10000
! minute = (hco_collection%lastHms - hour*10000) / 100
! second = hco_collection%lastHms - hour*10000 - minute*100
! write(referenceTime_str,'(I4.4, "-", I2.2, "-", I2.2, " ", I2.2, ":", I2.2, ":", I2.2)') year, month, day, hour, minute, second
! call geth_newdate(new_referenceTime_str, referenceTime_str, delta_s)
! read(new_referenceTime_str(1:4), *) year
! read(new_referenceTime_str(6:7), *) month
! read(new_referenceTime_str(9:10), *) day
! read(new_referenceTime_str(12:13), *) hour
! read(new_referenceTime_str(15:16), *) minute
! read(new_referenceTime_str(18:19), *) second
! write(filename, *)trim(hco_collection%PREFIX), "_", new_referenceTime_str(1:4),'_',new_referenceTime_str(6:7),"_", new_referenceTime_str(9:10),new_referenceTime_str(12:13),new_referenceTime_str(15:16), new_referenceTime_str(18:19), '.nc'
! endif
! hco_collection%lastYMD = year*10000 + month*100 + day
! hco_collection%lastHms = hour*10000 + minute*100 + second
filename = trim(ADJUSTL(filename))
call create_file(filename, ncid, ide, jde, kte, dimids, State_Grid, Input_Opt)
ierr = nf90mpi_redef(ncid)
call check(ierr, 'redef')
! def var all at once
hco_diag => hco_collection%DiagnList
do while(associated(hco_diag))
if ( hco_diag%SpaceDim == 2 .and. associated(hco_diag%Arr2D))then
if (debug_level .ge. 500) then
write(*,*)'def hemco diagn 2d: name: ', hco_diag%cName
endif
if (associated(hco_diag%Arr2D%Val))then
ierr = nf90mpi_def_var(ncid, trim(hco_diag%cName), NF90_FLOAT, (/dimids(1), dimids(2), dimids(4)/), varid)
call check(ierr, 'def var')
else
write(*,*)'val not allocated'
endif
endif
if (hco_diag%SpaceDim == 3 .and. associated(hco_diag%Arr3D))then
if (debug_level .ge. 500) then
write(*,*)'def hemco diagn 3d : name: ', hco_diag%cName
endif
if (associated(hco_diag%Arr3D%Val))then
ierr = nf90mpi_def_var(ncid, trim(hco_diag%cName), NF90_FLOAT, (/dimids(1), dimids(2), dimids(3), dimids(4)/), varid)
call check(ierr, 'def var')
else
write(*,*)'val not allocated'
endif
endif
ierr = nf90mpi_put_att(ncid, varid, 'units', trim(hco_diag%OutUnit))
ierr = nf90mpi_put_att(ncid, varid, 'long_name', trim(hco_diag%long_name))
hco_diag => hco_diag%NextCont
enddo
ierr = nf90mpi_enddef(ncid)
call check(ierr, 'enddef')
! write dimension
allocate(Grid_Lat(State_Grid%NY), STAT=RC)
call checkgc(RC, 'allocate Grid_lat')
do i = 1,State_Grid%NY
Grid_Lat(i) = State_Grid%YMid(1, i)
enddo
call writeDimension('lat', Grid_Lat, ncid, jts, jte)
allocate(Grid_Lon(State_Grid%NX), STAT=RC)
call checkgc(RC, 'allocate Grid_lon')
do i = 1,State_Grid%NX
Grid_Lon(i) = State_Grid%XMid(i, 1)
enddo
call writeDimension('lon', Grid_Lon, ncid, its, ite)
allocate(Grid_LatE(State_Grid%NY+1), STAT=RC)
call checkgc(RC, 'allocate Grid_lat')
do i = 1,State_Grid%NY+1
Grid_LatE(i) = State_Grid%YEdge(1, i)
enddo
call writeDimension('lat_e', Grid_LatE, ncid, jts, jte+1)
allocate(Grid_LonE(State_Grid%NX+1), STAT=RC)
call checkgc(RC, 'allocate Grid_lon')
do i = 1,State_Grid%NX+1
Grid_LonE(i) = State_Grid%XEdge(i, 1)
enddo
call writeDimension('lon_e', Grid_LonE, ncid, its, ite+1)
! write time
ierr = nf90mpi_inq_varid(ncid, 'time', varid)
call check(ierr, 'inq varid time')
time_index = 1
time_count = 1
time_unix_start = "1970-01-01_00:00:00"
call geth_idts(currTime_str(1:19), time_unix_start(1:19), time_unix)
time_unixs(1) = time_unix
ierr = nf90mpi_put_var_all(ncid, varid, time_unixs, (/time_index/), (/time_count/))
call check(ierr, 'put var time')
! write data array
hco_diag => hco_collection%DiagnList
do while(associated(hco_diag))
Source_2d_4 => NULL()
Source_3d_4 => NULL()
if(debug_level .ge. 500)then
write(*,* )'write hemco diagn: ', hco_diag%cID
endif
if ( hco_diag%SpaceDim == 2 .and. associated(hco_diag%Arr2D))then
CALL GetHcoDiagn( HcoState, ExtState,hco_diag%cName, .false., RC, Ptr2D=Source_2d_4, &
COL=HcoState%Diagn%HcoDiagnIDDefault)
if (debug_level .ge. 500) then
write(*,*)'write hemco diagn 2d: name: ', hco_diag%cName
endif
if (associated(Source_2d_4))then
call write2file(trim(hco_diag%cName), Source_2d_4, &
Data_2d, its, ite, jts, jte, ide, jde, &
time_index, ncid, (/dimids(1:2), dimids(4)/),&
trim(hco_diag%OutUnit), trim(hco_diag%long_name))
else
write(*,*)'val not allocated'
endif
endif
if (hco_diag%SpaceDim == 3 .and. associated(hco_diag%Arr3D))then
CALL GetHcoDiagn( HcoState, ExtState,hco_diag%cName, .false., RC, Ptr3D=Source_3d_4, &
COL=HcoState%Diagn%HcoDiagnIDDefault)
if (debug_level .ge. 500) then
write(*,*)'write hemco diagn 3d : name: ', hco_diag%cName
endif
if (associated(Source_3d_4))then
call write2file3d(trim(hco_diag%cName), Source_3d_4, &
Data_3d, its, ite, jts, jte, ide, jde, &
kte, time_index, ncid, dimids, &
trim(hco_diag%OutUnit), trim(hco_diag%long_name))
else
write(*,*)'val not allocated'
endif
endif
Source_2d_4 => NULL()
Source_3d_4 => NULL()
hco_diag => hco_diag%NextCont
enddo
call closefile(ncid)
endif
T2 = MPI_Wtime()
write(*,*)'hemco write time: ', T2-T1
hco_collection => hco_collection%NextCollection
enddo
! clean up
hco_collection => null()
Grid_Lat => null()
Grid_Lon => null()
Grid_LatE => null()
Grid_LonE => null()
Source_2d_4 => NULL()
Source_3d_4 => NULL()
! write wrfchem diagnostic
Current_metahistcontainer => CollectionList(State_Grid%id)%p
do while(associated(Current_metahistcontainer))
! open file according to the reference time
Current_container => Current_metahistcontainer%Container
year = Current_container%ReferenceYmd / 10000
month = (Current_container%ReferenceYmd - year*10000) / 100
day = Current_container%ReferenceYmd - year*10000 - month*100
hour = Current_container%ReferenceHms / 10000
minute = (Current_container%ReferenceHms - hour*10000) / 100
second = Current_container%ReferenceHms - hour*10000 - minute*100
write(referenceTime_str, '(I4.4, "-", I2.2, "-", I2.2, " ", I2.2, ":", I2.2, ":", I2.2)') year, month, day, hour, minute, second
! if referencetime < starttime, create new file
! referencetime = starttime + n*fileclosetime
call geth_idts(referenceTime_str(1:19), startTime_str(1:19), time_interval)
! write(*,*)'file close time_interval: ', time_interval
! write(*,*)'reference time: ', trim(referenceTime_str)
! write(*,*)'start time: ', trim(startTime_str)
if (time_interval<0) then
! At the begining of simulation
call construct_filename(startTime_str, Current_container%Filename, filename, domainName)
call create_file(filename, Current_container%FileId, ide, jde, kte, dimids, State_Grid, Input_Opt)
read(currTime_str(1:4), *) year
read(currTime_str(6:7), *) month
read(currTime_str(9:10), *) day
read(currTime_str(12:13), *) hour
read(currTime_str(15:16), *) minute
read(currTime_str(18:19), *) second
! update current container
Current_container%ReferenceYmd = year*10000 + month*100 + day
Current_container%ReferenceHms = hour*10000 + minute*100 + second
Current_container%xDimId = dimids(1)
Current_container%yDimId = dimids(2)
Current_container%zDimId = dimids(3)
Current_container%tDimId = dimids(4)
Current_container%IsFileOpen = .true.
! write(*,*)'after create file: ', Current_container%FileId
! write(*,*)'file dimids: ', Current_container%xDimId, Current_container%yDimId, Current_container%zDimId, Current_container%tDimId
! write(*,*)'file is open: ', Current_container%IsFileOpen
else
! if currenttime > referencetime + fileclosetime, close file then create new file
call geth_idts(currTime_str(1:19), referenceTime_str(1:19), time_interval)
! write(*,*)'time interval: ', time_interval
if ( time_interval >= Current_container%FileCloseIvalSec)then
! write(*,*)'close file', Current_container%FileId
call closefile(Current_container%FileId)
call geth_newdate(new_referenceTime_str(1:19), referenceTime_str(1:19), int(Current_container%FileCloseIvalSec))
call construct_filename(new_referenceTime_str, Current_container%Filename, filename, domainName)
filename = trim(filename)
call create_file(filename, Current_container%FileId, ide, jde, kte, dimids, State_Grid, Input_Opt)
read(new_referenceTime_str(1:4), *) year
read(new_referenceTime_str(6:7), *) month
read(new_referenceTime_str(9:10), *) day
read(new_referenceTime_str(12:13), *) hour
read(new_referenceTime_str(15:16), *) minute
read(new_referenceTime_str(18:19), *) second
! update current container
Current_container%ReferenceYmd = year*10000 + month*100 + day
Current_container%ReferenceHms = hour*10000 + minute*100 + second
Current_container%xDimId = dimids(1)
Current_container%yDimId = dimids(2)
Current_container%zDimId = dimids(3)
Current_container%tDimId = dimids(4)
Current_container%IsFileOpen = .true.
else
! write(*,*)'is file opened?',Current_container%IsFileOpen
if (Current_container%IsFileOpen) then
! write(*,*)'file is open: ', Current_container%FileId
! if currenttime < referencetime + fileclosetime, use current file
dimids(1) = Current_container%xDimId
dimids(2) = Current_container%yDimId
dimids(3) = Current_container%zDimId
dimids(4) = Current_container%tDimId
else
! write(*,*)'file is not open'
! currenttime < referencetime + fileclosetime, but file is not open, open file
call construct_filename(referenceTime_str, Current_container%Filename, filename, domainName)
filename = trim(filename)
call create_file(filename, Current_container%FileId, ide, jde, kte, dimids, State_Grid, Input_Opt)
Current_container%xDimId = dimids(1)
Current_container%yDimId = dimids(2)
Current_container%zDimId = dimids(3)
Current_container%tDimId = dimids(4)
Current_container%IsFileOpen = .true.
endif
endif
endif
! write file according to currentcontainer%currentYmd
!
year = Current_container%CurrentYmd / 10000
month = (Current_container%CurrentYmd - year*10000) / 100
day = Current_container%CurrentYmd - year*10000 - month*100
hour = Current_container%CurrentHms / 10000
minute = (Current_container%CurrentHms - hour*10000) / 100
second = Current_container%CurrentHms - hour*10000 - minute*100
write(time_str, '(I4.4, "-", I2.2, "-", I2.2, " ", I2.2, ":", I2.2, ":", I2.2)') year, month, day, hour, minute, second
call geth_idts( currTime_str(1:19), time_str(1:19), time_interval)
! 1. interval < 0, write to current file, update container%currentYmd
! 2. interval > 0, interval < fileupdateinterval, skip
! 3. interval > 0, interval > fileupdateinterval, write to current file and update container%currentYmd
! write(*,*)'current diag: ', trim(Current_container%Name)
! write(*,*)'time_interval: ', time_interval
! write(*,*)'updateinterval: ', Current_container%UpdateIvalSec
! write(*,*)'current time:', trim(currTime_str)
! write(*,*)'last write time: ', trim(time_str)
if (time_interval <= 0 .or. time_interval >= Current_container%UpdateIvalSec)then
! write dimensions to variables
ierr = nf90mpi_inquire_dimension(Current_container%FileId, dimids(4), len=time_index)
call check(ierr, 'inq dim time')
! write(*,*)'time length: ', time_index
if (time_index == 0) then
if (debug_level .ge. 500) then
write(*,*)'def vars'
endif
Current_metahistitem => Current_container%HistItems
ierr = nf90mpi_redef(Current_container%FileId)
call check(ierr, 'redef')
! def var all at once
do while(associated(Current_metahistitem))
Current_Item => Current_metahistitem%Item
SELECT CASE(Current_Item%SpaceDim)
CASE( 3 )
ierr = nf90mpi_def_var( Current_container%FileId, \
trim(Current_Item%Name), \
NF90_FLOAT, \
(/dimids(1),dimids(2),dimids(3),dimids(4)/), \
varid)
call check(ierr, 'def var')
Current_Item%NcVarId = varid
CASE( 2 )
ierr = nf90mpi_def_var( Current_container%FileId, \
trim(Current_Item%Name), \
NF90_FLOAT, \
(/dimids(1),dimids(2),dimids(4)/), \
varid)
call check(ierr, 'def var')
Current_Item%NcVarId = varid
end select
ierr = nf90mpi_put_att(Current_container%FileId, \
varid,\
'units', \
trim(Current_Item%Units))
ierr = nf90mpi_put_att(Current_container%FileId, \
varid,\
'long_name', \
trim(Current_Item%LongName))
Current_metahistitem => Current_metahistitem%Next
enddo
ierr = nf90mpi_enddef(Current_container%FileId)
call check(ierr, 'enddef, may caused by too many variables in the collection')
if (debug_level .ge. 500) then
write(*,*)'write dimensions'
endif
allocate(Grid_Lat(State_Grid%NY), STAT=RC)
call checkgc(RC, 'allocate Grid_lat')
do i = 1,State_Grid%NY
Grid_Lat(i) = State_Grid%YMid(1, i)
enddo
call writeDimension('lat', Grid_Lat, Current_container%FileId, jts, jte)
allocate(Grid_Lon(State_Grid%NX), STAT=RC)
call checkgc(RC, 'allocate Grid_lon')
do i = 1,State_Grid%NX
Grid_Lon(i) = State_Grid%XMid(i, 1)
enddo
call writeDimension('lon', Grid_Lon, Current_container%FileId, its, ite)
allocate(Grid_LatE(State_Grid%NY+1), STAT=RC)
call checkgc(RC, 'allocate Grid_lat')
do i = 1,State_Grid%NY+1
Grid_LatE(i) = State_Grid%YEdge(1, i)
enddo
call writeDimension('lat_e', Grid_LatE, Current_container%FileId, jts, jte+1)
allocate(Grid_LonE(State_Grid%NX+1), STAT=RC)
call checkgc(RC, 'allocate Grid_lon')
do i = 1,State_Grid%NX+1
Grid_LonE(i) = State_Grid%XEdge(i, 1)
enddo
call writeDimension('lon_e', Grid_LonE, Current_container%FileId, its, ite+1)
! write index variables
write(*,*)'index variables: ', trim(IndexVariables(State_Grid%ID)%p%Item%Name)
Current_metahistitem => IndexVariables(State_Grid%ID)%p
do while(associated(Current_metahistitem))
Current_Item => Current_metahistitem%Item
SELECT CASE(Current_Item%SpaceDim)
CASE( 3 )
if (Current_Item%Source_KindVal == KINDVAL_F8) then
Current_Item%Data_3d = Current_Item%Source_3d_8
else if (Current_Item%Source_KindVal == KINDVAL_F4) then
Current_Item%Data_3d = Current_Item%Source_3d_4
else if (Current_Item%Source_KindVal == KINDVAL_I4) then
Current_Item%Data_3d = Current_Item%Source_3d_I
endif
CASE( 2 )
if (Current_Item%Source_KindVal == KINDVAL_F8) then
Current_Item%Data_2d = Current_Item%Source_2d_8
else if (Current_Item%Source_KindVal == KINDVAL_F4) then
Current_Item%Data_2d = Current_Item%Source_2d_4
else if (Current_Item%Source_KindVal == KINDVAL_I4) then
Current_Item%Data_2d = Current_Item%Source_2d_I
endif
CASE( 1 )
if (Current_Item%Source_KindVal == KINDVAL_F8) then
Current_Item%Data_1d = Current_Item%Source_1d_8
else if (Current_Item%Source_KindVal == KINDVAL_F4) then
Current_Item%Data_1d = Current_Item%Source_1d_4
else if (Current_Item%Source_KindVal == KINDVAL_I4) then
Current_Item%Data_1d = Current_Item%Source_1d_I
endif
CASE( 0 )
Current_Item%Data_0d = Current_Item%Source_0d_8
end select
SELECT CASE(Current_Item%Name)
! CASE('lat_bnds')
! ierr = nf90mpi_redef(Current_container%FileId)
! call check(ierr, 'redef')
! ierr = nf90mpi_def_var( Current_container%FileId, \
! 'lat_bnds', \
! NF90_FLOAT, \
! (/dimids(8),dimids(2)/), \
! varid)
! call check(ierr, 'def var lat_bnds')
! ierr = nf90mpi_enddef(Current_container%FileId)
! call check(ierr, 'enddef')
! ierr = nf90mpi_put_var_all( Current_container%FileId,\
! varid,\
! Current_Item%Data_2d,\
! (/int(1,kind=MPI_OFFSET_KIND),jts/),\
! (/int(2,kind=MPI_OFFSET_KIND),jte-jts+1/) )
! call check(ierr, 'put var latbnds')
! CASE('lon_bnds')
! ierr = nf90mpi_redef(Current_container%FileId)
! call check(ierr, 'redef')
! ierr = nf90mpi_def_var( Current_container%FileId, \
! 'lon_bnds', \
! NF90_FLOAT, \
! (/dimids(8),dimids(1)/), \
! varid)
! call check(ierr, 'def var lon_bnds')
! ierr = nf90mpi_enddef(Current_container%FileId)
! call check(ierr, 'enddef')
! ierr = nf90mpi_put_var_all( Current_container%FileId,\
! varid,\
! Current_Item%Data_2d,\
! (/int(1,kind=MPI_OFFSET_KIND),its/),\
! (/int(2,kind=MPI_OFFSET_KIND),ite-its+1/) )
! call check(ierr, 'put var lonbnds')
CASE('lev')
ierr = nf90mpi_inq_varid(Current_container%FileId, 'lev', varid)
call check(ierr, 'inq lev')
ierr = nf90mpi_put_var_all( Current_container%FileId,\
varid,\
Current_Item%Data_1d,\
(/int(1, MPI_OFFSET_KIND)/),\
(/kte/) )
call check(ierr, 'put var lev')
CASE('ilev')
ierr = nf90mpi_inq_varid(Current_container%FileId, 'ilev', varid)
call check(ierr, 'inq ilev')
ierr = nf90mpi_put_var_all( Current_container%FileId,\
varid,\
Current_Item%Data_1d,\
(/int(1, MPI_OFFSET_KIND)/),\
(/kte+1/) )
call check(ierr, 'put var ilev')
CASE('hyam')
ierr = nf90mpi_redef(Current_container%FileId)
call check(ierr, 'redef')
ierr = nf90mpi_def_var( Current_container%FileId, \
'hyam', \
NF90_FLOAT, \
dimids(3), \
varid)
call check(ierr, 'def var hyam')
ierr = nf90mpi_put_att( Current_container%FileId,\
varid,\
'units',\
Current_Item%Units)
ierr = nf90mpi_put_att( Current_container%FileId,\
varid,\
'long_name',\
Current_Item%LongName)
ierr = nf90mpi_enddef(Current_container%FileId)
call check(ierr, 'enddef')
ierr = nf90mpi_put_var_all( Current_container%FileId,\
varid,\
Current_Item%Data_1d,\
(/int(1, MPI_OFFSET_KIND)/),\
(/kte/) )
call check(ierr, 'put var hyam')
CASE('hybm')
ierr = nf90mpi_redef(Current_container%FileId)
call check(ierr, 'redef')
ierr = nf90mpi_def_var( Current_container%FileId, \
'hybm', \
NF90_FLOAT, \
dimids(3), \
varid)
call check(ierr, 'def var hybm')
ierr = nf90mpi_put_att( Current_container%FileId,\
varid,\
'units',\
Current_Item%Units)
ierr = nf90mpi_put_att( Current_container%FileId,\
varid,\
'long_name',\
Current_Item%LongName)
ierr = nf90mpi_enddef(Current_container%FileId)
call check(ierr, 'enddef')
ierr = nf90mpi_put_var_all( Current_container%FileId,\
varid,\
Current_Item%Data_1d,\
(/int(1, MPI_OFFSET_KIND)/),\
(/kte/) )
call check(ierr, 'put var hybm')
CASE('hyai')
ierr = nf90mpi_redef(Current_container%FileId)
call check(ierr, 'redef')
ierr = nf90mpi_def_var( Current_container%FileId, \
'hyai', \
NF90_FLOAT, \
dimids(7), \
varid)
call check(ierr, 'def var hyai')
ierr = nf90mpi_put_att( Current_container%FileId,\
varid,\
'units',\
Current_Item%Units)
ierr = nf90mpi_put_att( Current_container%FileId,\
varid,\
'long_name',\
Current_Item%LongName)
ierr = nf90mpi_enddef(Current_container%FileId)
call check(ierr, 'enddef')
ierr = nf90mpi_put_var_all( Current_container%FileId,\
varid,\
Current_Item%Data_1d,\
(/int(1, MPI_OFFSET_KIND)/),\
(/kte/) )
call check(ierr, 'put var hyai')
CASE('hybi')
ierr = nf90mpi_redef(Current_container%FileId)
call check(ierr, 'redef')
ierr = nf90mpi_def_var( Current_container%FileId, \
'hybi', \
NF90_FLOAT, \
dimids(7), \
varid)
call check(ierr, 'def var hybi')
ierr = nf90mpi_put_att( Current_container%FileId,\
varid,\
'units',\
Current_Item%Units)
ierr = nf90mpi_put_att( Current_container%FileId,\
varid,\
'long_name',\
Current_Item%LongName)
ierr = nf90mpi_enddef(Current_container%FileId)
call check(ierr, 'enddef')
ierr = nf90mpi_put_var_all( Current_container%FileId,\
varid,\
Current_Item%Data_1d,\
(/int(1, MPI_OFFSET_KIND)/),\
(/kte/) )
call check(ierr, 'put var hybi')
! ======= AREA is not working for now =======
! CASE('AREA')
! ierr = nf90mpi_redef(Current_container%FileId)
! call check(ierr, 'redef')
! ierr = nf90mpi_def_var( Current_container%FileId, \
! 'AREA', \
! NF90_FLOAT, \
! (/dimids(1), dimids(2)/), \
! varid)
! call check(ierr, 'def var AREA')
! ierr = nf90mpi_put_att( Current_container%FileId,\
! varid,\
! 'units',\
! Current_Item%Units)
! ierr = nf90mpi_put_att( Current_container%FileId,\
! varid,\
! 'long_name',\
! Current_Item%LongName)
! ierr = nf90mpi_enddef(Current_container%FileId)
! call check(ierr, 'enddef')
! ierr = nf90mpi_put_var_all( Current_container%FileId,\
! varid,\
! Current_Item%Data_2d,\
! (/its, jts/),\
! (/ite-its+1, jte-jts+1/) )
! call check(ierr, 'put var AREA')
CASE('P0')
ierr = nf90mpi_redef(Current_container%FileId)
call check(ierr, 'redef')
ierr = nf90mpi_def_var( Current_container%FileId, \
'P0', \
NF90_FLOAT, \
varid)
call check(ierr, 'def var P0')
ierr = nf90mpi_put_att( Current_container%FileId,\
varid,\
'units',\
Current_Item%Units)
ierr = nf90mpi_put_att( Current_container%FileId,\
varid,\
'long_name',\
Current_Item%LongName)
call check(ierr, 'put att P0')
ierr = nf90mpi_enddef(Current_container%FileId)
call check(ierr, 'enddef')
ierr = nf90mpi_put_var_all( Current_container%FileId,\
varid,\
Current_Item%Data_0d)
call check(ierr, 'put var P0')
END SELECT
Current_metahistitem => Current_metahistitem%Next
end do
endif
! write time
ierr = nf90mpi_inq_varid(Current_container%FileId, 'time', varid)
call check(ierr, 'inq varid time')
time_index = time_index + 1
time_count = 1
time_unix_start = "1970-01-01_00:00:00"
call geth_idts(currTime_str(1:19), time_unix_start(1:19), time_unix)
time_unixs(1) = time_unix
ierr = nf90mpi_put_var_all(Current_container%FileId, varid, time_unixs, (/time_index/), (/time_count/))
call check(ierr, 'put var time')
! write the data
! if instantaneous, write the source data
dimensions = (/Current_container%nX, Current_container%nY, Current_container%nZ/)
if (To_UpperCase(trim(Current_container%UpdateMode)) == To_UpperCase('instantaneous'))then
Current_metahistitem => Current_container%HistItems
do while (associated(Current_metahistitem))
! write(*,*) 'in while loop: ', trim(Current_metahistitem%Item%Name)
Current_Item => Current_metahistitem%Item
! write(*,*) 'current item ', Current_Item%Name
if (wrf_debug_level .ge. 500) then
write(*,*)'write item: ', Current_Item%Name
write(*,*)'write item: ', Current_Item%Units
write(*,*)'write item: ', Current_Item%LongName
endif
write(*,*)'write item: ', Current_Item%LongName
call writeItemName( Current_Item%Name, Input_Opt, State_Diag, State_Chm, State_Met,&
its, ite, jts, jte, ide, jde, kte, time_index, Current_container%FileId, dimids(1:4), &
Current_Item%SpaceDim, dimensions, &
Current_Item%Source_0d_8, Current_Item%Source_1d_8, Current_Item%Source_2d_8, Current_Item%Source_3d_8, &
Source_0d_4, Current_Item%Source_1d_4, Current_Item%Source_2d_4, Current_Item%Source_3d_4, &
Source_0d_I, Current_Item%Source_1d_I, Current_Item%Source_2d_I, Current_Item%Source_3d_I, &
Current_Item%Units, Current_Item%LongName)
Current_metahistitem => Current_metahistitem%Next
enddo
! if timeaveraged, average the data_2d/data_3d, and write
else if (To_UpperCase(trim(Current_container%UpdateMode)) == To_UpperCase('TIMEAVERAGED'))then