update_nextclade.yml

name: update nextclade dataset

on:
  workflow_dispatch:
  schedule:
    - cron: '30 4 * * TUE'

jobs:
  update-nextclade-dataset:
    runs-on: ubuntu-20.04
    steps:
      - name: Checkout
        uses: actions/checkout@master
        
      - name: download nextclade
        run: |
          wget -q https://github.com/nextstrain/nextclade/releases/latest/download/nextclade-x86_64-unknown-linux-gnu -O nextclade
          chmod +x nextclade
          ./nextclade --version
          ./nextclade dataset get --name sars-cov-2 --output-zip sars.zip
          mv sars.zip ./data/sars.zip
          rm -rf nextclade

      - name: Create Pull Request
        uses: peter-evans/create-pull-request@v5
        with:
            commit-message: Update nextclade dataset
            title: Update dataset
            body: |
              - Dependency updates
  
              Auto-generated by [create-pull-request][1]
  
              [1]: https://github.com/peter-evans/create-pull-request
            branch: update-dataset