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Transdecoder and transl_table=4 #179
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Hi,
These are the supported codes:
# --genetic_code | -G <string>
genetic code (default: universal; see PerlDoc; options: Euplotes,
Tetrahymena, Candida, Acetabularia)
…On Tue, Aug 22, 2023 at 10:51 AM frsepulveda ***@***.***> wrote:
Hi!
I'm working in the annotation of a red algae which have "transl_table=4"
genetic code. Can Transdecoder use this type of genetic code?
I was looking in the manual but I can't find nothing.
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Brian J. Haas
The Broad Institute
http://broadinstitute.org/~bhaas <http://broad.mit.edu/~bhaas>
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Sorry, here's the full list of supported codes:
Acetabularia
Candida
Ciliate
Dasycladacean
Euplotid
Hexamita
Mesodinium
Mitochondrial-Ascidian
Mitochondrial-Chlorophycean
Mitochondrial-Echinoderm
Mitochondrial-Flatworm
Mitochondrial-Invertebrates
Mitochondrial-Protozoan
Mitochondrial-Pterobranchia
Mitochondrial-Scenedesmus_obliquus
Mitochondrial-Thraustochytrium
Mitochondrial-Trematode
Mitochondrial-Vertebrates
Mitochondrial-Yeast
Pachysolen_tannophilus
Peritrich
SR1_Gracilibacteria
Tetrahymena
Universal
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I think the Mitochondrial-Protozoan in Transdecoder is same as "4. The Mold, Protozoan, and Coelenterate Mitochondrial Code and the Mycoplasma/Spiroplasma Code (transl_table=4)". @frsepulveda |
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Hi!
I'm working in the annotation of a red algae which have "transl_table=4" genetic code. Can Transdecoder use this type of genetic code?
I was looking in the manual but I can't find nothing.
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