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MigrateSubmission5.rb
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MigrateSubmission5.rb
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require 'pg'
require 'time'
require 'open3'
require 'fileutils'
require_relative 'MigrateGlobal.rb'
#require_relative 'SiteSpecific.rb'
require_relative 'SiteSpecific.rb'
=begin
mapSubmission:
Create V4.submission from V3.submission, mapping V3.college,V3.department,V3.program to a V4.organization. This also requires the creation of V4.submission_workflow_step and V4.submission_submission_workflow_steps entries.
Most of the data in V3.submission is stored in V4.field_value and V4.submission_field_value entries via the updateSubmissionFV() method.
The V4.submission fields approve_advisor, approve_advisor_date, approve_application, approve_application_date, approve_embargo, and approve_embargo_date are updated from V3.action_log.
V4.submission_workflow_step and V4.submission_submission_workflow_steps are filled based on organization ancestors in V4.organization.
V4.submission is further updated with assignee_id.
fieldValueExtras:
Other V4.field_value and V4.submission_field_values entries are created based on contact info and address values.
fileUpload:
For each V4.submission record the V3.attachment records are searched for documents. Each of these documents are categorized by mime type (guessed) and are copied from the V3 data structure to a new V4.data structure under a path determined by the submitter's email address (as calculated by getJavaHash() which calls a java program.
A V4.field_value and V4.submission_field_value entry is made for each file.
=end
module VIREO
DEST_SUBDIR = "private/"
module Map
class << self
@@duplicateFieldPredicateList = [1, 2, 3, 5, 6, 7, 8, 34, 35]
#######################
def hasMultipleCoChairs()
cochairSelect = "SELECT DISTINCT(roles) FROM committee_member_roles;"
v3ccRS = VIREO::CON_V3.exec cochairSelect
v3ccRS.each do |row|
if (row['roles'] == 'Co-Chair')
puts "CO CHAIR TRUE"
return true
end
end
puts "CO CHAIR FALSE"
return false
end
def setRepeatInAbstractFieldProfile(pred_id, val)
if (VIREO::REALRUN)
afpUpdate = "UPDATE abstract_field_profile SET repeatable = '%s' WHERE field_predicate_id = %s;" % [val,
pred_id.to_s]
begin
v4_afpRS = VIREO::CON_V4.exec afpUpdate
rescue StandardError => e
puts "ERROR SETTING Abstract_field_profile TO ALLOW MULTIPLE CO CHAIRS"
puts afpUpdate
end
end
end
# #SUBMISSION
def mapSubmission()
# if(hasMultipleCoChairs())
# @@duplicateFieldPredicateList << 37
# setRepeatInAbstractFieldProfile(37,'t')
# end
puts "DUP PRED " + @@duplicateFieldPredicateList.to_s
fpcommittee = "SELECT id FROM field_predicate WHERE value LIKE 'dc.contributor.%';"
v4fpcRS = VIREO::CON_V4.exec fpcommittee
begin
v4fpcRS.each do |row|
id = row['id'].to_i
@@duplicateFieldPredicateList << id
setRepeatInAbstractFieldProfile(id,'t')
end
end
totalExpected = 0
subCount = "SELECT COUNT(*) FROM submission;"
v3scRS = VIREO::CON_V3.exec subCount
begin
v3scRS.each do |row|
totalExpected = row['count'].to_i
end
end
submissionSelect = "SELECT s.* FROM submission s;"
completed = 0
failed = 0
v3submissionRS = VIREO::CON_V3.exec submissionSelect
puts "V3 SUBMISSIONS LIST OF " + v3submissionRS.count.to_s + " SUBMISSIONS AT " + VIREO::INSTITUTION + " ==========================================="
v3submissionRS.each do |row|
begin
organization_id = 1
college = row['college']
department = row['department']
department_id = row['department_id']
submitter_id = row['submitter_id']
assignee_id = row['assignee_id']
deposit_id = row['depositid']
reviewernotes = row['reviewernotes']
if(reviewernotes != nil)
reviewernotes = VIREO::CON_V4.escape_string(reviewernotes)
end
documenttype = row['documenttype']
degreelevel = row['degreelevel']
degree = row['degreelevel']
submission_date = row['submissiondate']
approval_date = row['approvaldate']
committeeapprovaldate = row['committeeapprovaldate']
committeeembargoapprovaldate = row['committeeembargoapprovaldate']
lastactionlogdate = row['lastactionlogdate']
# #following set into submission_field_values
licenseagreementdate = row['licenseagreementdate']
defensedate = row['defensedate']
# puts "APPR DATE "+approval_date.to_s
# puts "COMM APPR DATE "+committeeapprovaldate.to_s
puts "#############################################\n\n"
if ((submission_date != nil) && (submission_date.length > 10))
submission_date = submission_date.split(' ')[0].strip()
end
if ((approval_date != nil) && (approval_date.length > 10))
approval_date = approval_date.split(' ')[0].strip()
end
puts "V3 SUBMISSION ID " + row['id'].to_s + " SUBDATE " + submission_date.to_s + " APPRDATE " + approval_date.to_s
program = row['program']
# program = ''#BECAUSE PEOPLE SET THIS FIELD ERRONEOUSLY IN THIS PARTICULAR SAMPLE DATA SET
# #START SEARCH FROM MOST SPECIFIC ORGANIZATION AND MOVE UP UNTIL ONE IS LOCATED
org = orgSearchByDegree(degreelevel, college, department, program)
# puts " ORG "+org.to_s
organization_id = org['organization_id'].to_i
submission_status_id = 1; # LAST SUB STATUS IN ACTIONLOG FOR THIS SUBMISSION
submission_id = row['id'];
if (organization_id.to_i <= 0)
puts " ERROR FAILED TO FIND ORG " + org.to_s + " COUNT " + actionLogCount(row['id'].to_i).to_s + " SUBM_ID " + submission_id.to_s
# puts lastAction(submission_id)
failed += 1
else
puts " FOR ORG ID " + organization_id.to_s
sub_id = createSubmission(submission_id, organization_id, submission_status_id, submitter_id, deposit_id,reviewernotes)
puts " JUST CREATED SUBMISSION WITH ID " + sub_id.to_s
if (sub_id == -1)
puts "CREATE SUB ERROR FOR V3 SUB ID " + submission_id.to_s
failed += 1
elsif (sub_id == 0)
puts "FOUND EXISTING SUBMISSION ERROR FOR V3 SUB ID " + submission_id.to_s
else
completed += 1
# puts " CREATED SUBMISSION ID "+submission_id.to_s
sub_id = updateSubmissionDates(submission_id, submission_date, approval_date)
sub_id = updateSubmissionDatesFromActionlog(submission_id)
# puts " UPDATE SUB " +sub_id.to_s+" ROW "+row.to_s
sub_id = updateSubmissionFV(submission_id, row)
# puts " UPDATE SUB FV "+sub_id.to_s
sub_id = updateSubmissionWFS(submission_id, organization_id)
# puts " UPDATE SUB WFS "+sub_id.to_s
if ((assignee_id != nil) && (assignee_id.length > 0))
# puts " UPDATE SUB ASSIGNEE "+assignee_id.to_s
updateSubmissionAssignee(submission_id, assignee_id)
else
puts " UPDATE SUB ASSIGNEE NOT HAPPENING"
end
updateSubmissionMisc(submission_id)
end
end
puts "################"
rescue StandardError => e
failed += 1
puts "MAPSUB EXCEPTION " + e.message
end
puts "TOTAL EXPECTED " + totalExpected.to_s + " COMPLETED " + completed.to_s + " FAILED " + failed.to_s
end
return { "completed": completed, "failed": failed }
end
def updateSubmissionAssignee(submission_id, assignee_id)
subUpdate = "UPDATE submission SET assignee_id = %s WHERE id = %s;" % [assignee_id, submission_id]
# puts "SUB UPDATE ASSIGN "+subUpdate
v4_subRS = VIREO::CON_V4.exec subUpdate
end
def createSubmission(id, organization_id, submission_status_id, submitter_id, deposit_id,reviewernotes)
# UTILITY FOR BUILDING V4.SUBMISSION
## ONLY NEED TO LOOK FOR ID AS ALL FIELDS ARE IMMUTABLE EXCEPT SUBMISSION_STATUS_ID AND THAT IS SET IN MigrateActionLog.rb
# puts "DEPOSITID "+deposit_id.to_s
# submissionFind = "SELECT id,submission_date FROM submission WHERE organization_id=%s AND submitter_id=%s;" % [organization_id,submitter_id]
# THE QUERY ABOVE MAY GET CONFUSED WITH A STUDENTS UNFINISHED SUBMISSION AND COULD CAUSE THEM PROBLEMS LATER
submissionFind = "SELECT id,submission_date FROM submission WHERE id=%s AND organization_id=%s AND submitter_id=%s;" % [
id, organization_id, submitter_id
]
v4_submissionF = VIREO::CON_V4.exec submissionFind
if ((v4_submissionF != nil) && (v4_submissionF.count > 0))
# puts "SUBMISSION FIND "+submissionFind
# v4_submissionF.each do |row|
# puts "V4 FOUND EXISTING SUBMISSION "+row.to_s
# if(row['id']==id)
# puts "NORMAL"
# else
# puts "FOUND DUPLICATE!!!!!!! "
# end
# end
return v4_submissionF[0]['id'].to_i
else
sub_id = -1
if (VIREO::REALRUN)
submissionInsert = "INSERT INTO submission (id,organization_id,submission_status_id,submitter_id,depositurl,reviewer_notes) VALUES(%s,%s,%s,%s,'%s','%s') RETURNING id;" % [
id, organization_id, submission_status_id, submitter_id, deposit_id,reviewernotes ]
puts "SUB " + submissionInsert.to_s
begin
v4_submissionRS = VIREO::CON_V4.exec submissionInsert
if ((v4_submissionRS != nil) && (v4_submissionRS.count > 0))
sub_id = v4_submissionRS[0]['id'].to_i
puts "V4 CREATED SUBMISSION WITH ID " + sub_id.to_s
end
rescue StandardError => e
puts "\nFAILED SUBMISSION " + submissionInsert + " ERR " + e.message;
showOldSubDetails(id);
sub_id = -1
end
else
sub_id = 0
end
return sub_id
end
end
def showOldSubDetails(id)
oldsubSelect = "SELECT s.id,s.submitter_id,s.lastactionlogdate,s.documentabstract,s.documentkeywords,s.documenttitle FROM submission s WHERE s.id=%s;" % [id]
completed = 0
failed = 0
begin
v3oldsubRS = VIREO::CON_V3.exec oldsubSelect
v3oldsubRS.each do |row|
puts "V3 SUB " + row.to_s
end
rescue StandardError => e
puts "OLD SUB EXCEPTION " + e.message
end
end
def genInd()
afp_max_id = 0
wsafpList = "SELECT * FROM workflow_step_aggregate_field_profiles ORDER BY aggregate_field_profiles_id;"
v4_fpF = VIREO::CON_V4.exec wsafpList
# arr = Array.new(4,Array.new)
ind1 = Array.new()
ind2 = Array.new()
ind3 = Array.new()
ind4 = Array.new()
afp_max_id = v4_fpF.count
puts "AFP " + afp_max_id.to_s
v4_fpF.each do |fp|
ws_id = fp['workflow_step_id'].to_i
afp_id = fp['aggregate_field_profiles_id'].to_i
afp_order = fp['aggregate_field_profiles_order']
puts "AFP WS " + (ws_id - 1).to_s + " << " + (afp_max_id.to_i + afp_id).to_s
# arr[(ws_id-1).to_i] << (afp_max_id+afp_id).to_i
if (ws_id == 1)
ind1 << (afp_max_id + afp_id).to_i
elsif (ws_id == 2)
ind2 << (afp_max_id + afp_id).to_i
elsif (ws_id == 3)
ind3 << (afp_max_id + afp_id).to_i
elsif (ws_id == 4)
ind4 << (afp_max_id + afp_id).to_i
end
end
return [ind1, ind2, ind3, ind4]
end
def updateSubmissionWFS(submission_id, organization_id)
begin
arr = genInd()
ind_0 = arr[0]
ind_1 = arr[1]
ind_2 = arr[2]
ind_3 = arr[3]
# enter an array of records for each submission_workflow_step based on its index.
# ind_0 = [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18]
# ind_1 = [19,20]
# ind_2 = [21,22,23,24,25,26,27,28,29,30,31,32,32]
# ind_3 = [33,34,35,36,37,38,39,40]
# WORKING_PLAIN
# ind_0 = [42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59]
# ind_1 = [60,61]
# ind_2 = [62,63,64,65,66,67,68,69,70,71,72,73,74]
# ind_3 = [75,76,77,78,79,80,81,82]
# CO_CHAIR
# ind_0 = [43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60]
# ind_1 = [61,62]
# ind_2 = [63,64,65,66,67,68,69,70,71,72,73,74,75,76]
# ind_3 = [77,78,79,80,81,82,83,84]
# #get array of workflow_steps for organization_id or its parent
wfsSelect = "SELECT id,instructions,name,overrideable FROM workflow_step WHERE originating_organization_id = 1;" % [organization_id]
## Eventually work up the hierarchy to find a valid org
v4_wfsRS = VIREO::CON_V4.exec wfsSelect
v4_wfsRS.each_with_index do |wfs, indx|
# enter a copy of each workflow_step into submission_workflow_step for each submission
swfsFind = "SELECT id FROM submission_workflow_step where instructions='%s' AND name='%s' AND overrideable='%s';" % [
wfs['instructions'], wfs['name'], wfs['overrideable']
]
v4_swfsF = VIREO::CON_V4.exec swfsFind
swfs_id = 0
if ((v4_swfsF != nil) && (v4_swfsF.count > 0))
swfs_id = v4_swfsF[0]['id'].to_i
puts " V4 FOUND SWFS "+swfs_id.to_s
else
swfs_id = 0
if (VIREO::REALRUN)
swfsInsert = "INSERT INTO submission_workflow_step VALUES(DEFAULT,'%s','%s','%s') RETURNING id;" % [ wfs['instructions'], wfs['name'], wfs['overrideable'] ]
v4_swfsRS = VIREO::CON_V4.exec swfsInsert
puts "SWFS INSERT "+swfsInsert
#FSS
#swf_ids = v4_swfsRS[0]['id'].to_i
swfs_id = v4_swfsRS[0]['id'].to_i
end
puts " V4 CREATED SWFS "+swfs_id.to_s
end
if (swfs_id != 0)
# enter a record for each submission and submission_workflow_step pair
sswfsFind = "SELECT * FROM submission_submission_workflow_steps WHERE submission_id=%s AND submission_workflow_steps_id=%s AND submission_workflow_steps_order=%s;" % [
submission_id.to_s, swfs_id.to_s, indx.to_s
]
v4_sswfsF = VIREO::CON_V4.exec sswfsFind
if ((v4_sswfsF != nil) && (v4_sswfsF.count > 0))
sswfs_id = v4_sswfsF[0]['submission_id'].to_i
puts " V4 FOUND SSWFS For SubmissionID "+sswfs_id.to_s
else
if (VIREO::REALRUN)
sswfsInsert = "INSERT INTO submission_submission_workflow_steps VALUES(%s,%s,%s);" % [submission_id.to_s,
swfs_id.to_s, indx.to_s]
puts "SSWFS INSERT "+sswfsInsert
v4_sswfsRS = VIREO::CON_V4.exec sswfsInsert
puts "V4 CREATED SSWFS INSERT "
end
end
# Get last index in submission_workflow_step_aggregate_field_profiles
swsafpiSelect = "SELECT MAX(submission_workflow_step_id) FROM submission_workflow_step_aggregate_field_profiles;"
v4_swsafpiRS = VIREO::CON_V4.exec swsafpiSelect
lastIndex = v4_swsafpiRS[0]['max'].to_i
puts "LAST INDEX "+lastIndex.to_s
# puts "DONE CREATING SSWS"
# this can be more efficient -fix later
if (indx == 0)
ind_0.each_with_index do |afp, orderindx|
createSWSAFP(swfs_id, afp, orderindx)
end
end
if (indx == 1)
ind_1.each_with_index do |afp, orderindx|
createSWSAFP(swfs_id, afp, orderindx)
end
end
if (indx == 2)
ind_2.each_with_index do |afp, orderindx|
createSWSAFP(swfs_id, afp, orderindx)
end
end
if (indx == 3)
ind_3.each_with_index do |afp, orderindx|
createSWSAFP(swfs_id, afp, orderindx)
end
end
end
end
return 0
rescue StandardError => e
puts "\nFAILED UPDATE WFS " + e.message;
return -1
end
end
def createSWSAFP(swfs_id, afp, orderindx)
puts "SWSAFP AFP "+afp.to_s
swsafpFind = "SELECT * FROM submission_workflow_step_aggregate_field_profiles WHERE submission_workflow_step_id=%s AND aggregate_field_profiles_id=%s AND aggregate_field_profiles_order=%s;" % [
swfs_id.to_s, afp.to_s, orderindx.to_s
]
puts "SWSAFP SELECT "+swsafpFind.to_s
v4_swsafpF = VIREO::CON_V4.exec swsafpFind
if ((v4_swsafpF != nil) && (v4_swsafpF.count > 0))
swfs_id = v4_swsafpF[0]['submission_workflow_step_id'].to_i
puts " V4 FOUND SSWFAP For INDX " +orderindx.to_s+" SubmissionWorkflowStepID "+swfs_id.to_s
else
if (VIREO::REALRUN)
swsafpInsert = "INSERT INTO submission_workflow_step_aggregate_field_profiles (submission_workflow_step_id,aggregate_field_profiles_id,aggregate_field_profiles_order) VALUES(%s,%s,%s);" % [
swfs_id.to_s, afp.to_s, orderindx.to_s
]
puts " V4 CREATED SWSAFP FOR INDX "+orderindx.to_s
v4_swsafpRS = VIREO::CON_V4.exec swsafpInsert
end
end
end
def updateSubmissionFV(submission_id, v3row)
# BIRTH YEAR SHOULD INSTEAD COME FROM person.birthyear BUT IS SPARSELY POPULATED ANYWAY
updateSFVUtility(submission_id, "birth_year", v3row['studentbirthyear']);
updateSFVUtility(submission_id, "previously_published_material", v3row['publishedmaterial']);
updateSFVUtility(submission_id, "dc.language.iso", v3row['documentlanguage']);
updateSFVUtility(submission_id, "thesis.degree.college", v3row['college']);
updateSFVUtility(submission_id, "thesis.degree.department", v3row['department']);
updateSFVUtility(submission_id, "dc.description.abstract", v3row['documentabstract']);
# updateSFVUtility(submission_id,"keywords",v3row['documentkeywords']);
keywords = v3row['documentkeywords'];
if (keywords != nil)
kwa = keywords.split(";")
kwa.each do |k|
updateSFVUtility(submission_id, "keywords", k);
end
end
updateSFVUtility(submission_id, "dc.title", v3row['documenttitle']);
updateSFVUtility(submission_id, "thesis.degree.major", v3row['major']);
updateSFVUtility(submission_id, "first_name", v3row['studentfirstname']);
updateSFVUtility(submission_id, "last_name", v3row['studentlastname']);
updateSFVUtility(submission_id, "middle_name", v3row['studentmiddlename']);
updateSFVUtility(submission_id, "thesis.degree.program", v3row['program']);
updateSFVUtility(submission_id, "local.etdauthor.orcid", v3row['orcid']);
updateSFVUtility(submission_id, "defense_date", v3row['defensedate']);
# license_agreement field_predicate_id:27
# puts "SUB "+submission_id+" LIC AGR "+v3row['licenseagreementdate'].to_s+" UMI "+v3row['umirelease'].to_s
if ((v3row['licenseagreeementdate'].to_s != nil) && (v3row['licenseagreementdate'].to_s.length > 1))
updateSFVUtility(submission_id, "license_agreement", "true");
puts " LA TRUE"
else
updateSFVUtility(submission_id, "license_agreement", "false");
puts " LA FALSE"
end
# umi_publication field_predicate_id:28 (proquest)
if (v3row['umirelease'].to_s == 't')
updateSFVUtility(submission_id, "umi_publication", "true");
puts " UM TRUE"
else
updateSFVUtility(submission_id, "umi_publication", "false");
puts " UM FALSE"
end
updateSFVUtility(submission_id, "thesis.degree.name", v3row['degree']);
graduationmonth = v3row['graduationmonth'].to_s
graduationyear = v3row['graduationyear'].to_s
# puts "GRADMONTH SUBID "+submission_id.to_s+" MO "+graduationmonth+" YR "+graduationyear
if ((graduationmonth.length > 0) && (graduationyear.length > 3))
graduationdatestr = Time.parse(graduationyear.to_s + "-" + (graduationmonth.to_i + 1).to_s + "-01").to_s
graduationTS = graduationdatestr[0..10].strip!
# presumably due to GMT and daylight savings time Dec,Jan,Feb,Mar need T06, all others T05
if ((graduationmonth.to_i == 11) || (graduationmonth.to_i < 3))
graduationTS = graduationTS + "T06:00:00.000Z"
else
graduationTS = graduationTS + "T05:00:00.000Z"
end
# puts " GRADMONTH TS "+graduationTS
updateSFVUtility(submission_id, "dc.date.issued", graduationTS)
end
updateSFVUtility(submission_id, "submission_type", v3row['documenttype'])
wu_id = getInstId(v3row['submitter_id'])
updateSFVUtility(submission_id, "institutional_id", wu_id)
end
def InstIdOnly()
fixCount = "SELECT id,submitter_id FROM submission;"
v4fixRS = VIREO::CON_V4.exec fixCount
begin
v4fixRS.each do |row|
wu_id = getInstId(row['submitter_id'].to_i)
updateSFVUtility(row['id'].to_i, "institutional_id", wu_id)
end
end
end
def getInstId(person_id)
iiSelect = "SELECT institutionalidentifier FROM person WHERE id = '%s';" % [person_id]
v3_iiRS = VIREO::CON_V3.exec iiSelect
inst_id = nil
v3_iiRS.each do |ii|
inst_id = ii['institutionalidentifier']
end
return inst_id;
end
def updateSubmissionMisc(submission_id)
# ADVISOR
# pSelect = "SELECT cmr.roles,cm.firstname,cm.middlename,cm.lastname FROM committee_member cm, committee_member_roles cmr WHERE cmr.jpacommitteememberimpl_id = cm.id AND cm.submission_id = %s;" % [submission_id]
pSelect = "SELECT cm.id,cm.firstname,cm.middlename,cm.lastname FROM committee_member cm WHERE cm.submission_id = %s;" % [submission_id]
puts "SUB QUERY " + pSelect
v3_pRS = VIREO::CON_V3.exec pSelect
v3_pRS.each do |p|
cm_id = p['id'].to_s
firstname = p['firstname'].to_s
middlename = p['middlename'].to_s
lastname = p['lastname'].to_s
roles = "Member"
roleSelect = "SELECT roles FROM committee_member_roles WHERE jpacommitteememberimpl_id = %s LIMIT 1;" % [cm_id.to_s]
v3_rRS = VIREO::CON_V3.exec roleSelect
v3_rRS.each do |r|
roles = r['roles']
end
puts "SUBID "+submission_id.to_s+" ADVISOR ROLE "+roles+" FN "+firstname+" LN "+lastname
if (roles == nil)
elsif (roles == 'Chair')
updateSFVUtility(submission_id, "dc.contributor.advisor", lastname + ", " + firstname + " " + middlename)
elsif (roles == 'Co-Chair')
updateSFVUtility(submission_id, "dc.contributor.advisor.Co-Chair",
lastname + ", " + firstname + " " + middlename)
elsif (roles == 'Member')
updateSFVUtility(submission_id, "dc.contributor.committeeMember",
lastname + ", " + firstname + " " + middlename)
else
String new_field_predicate = getNewContributorRole(roles)
updateSFVUtility(submission_id, new_field_predicate, "#{lastname}, #{firstname} #{middlename}")
end
end
# DEFAULT_EMBARGO
embSelect = "SELECT DISTINCT e.name,e.guarantor FROM embargo_type e, submission_embargotypes se WHERE e.id=se.embargotypeids AND se.submission_id = %s;" % [submission_id]
# puts "EMBARGO SELECT "+embSelect;
v3_embRS = VIREO::CON_V3.exec embSelect
v3_embRS.each do |emb|
embargo_name = emb['name'].to_s
guarantor = emb['guarantor'].to_i
# puts "DEF ID "+submission_id.to_s+" EMB NAME "+embargo_name+" GUAR "+guarantor.to_s
if (guarantor == 0)
updateSFVUtility(submission_id, "default_embargos", embargo_name)
elsif (guarantor == 1)
updateSFVUtility(submission_id, "proquest_embargos", embargo_name)
elsif puts "ERROR/UNKNOWN EMBARGO TYPE GUARANTOR " + guarantor.to_s
end
end
# SUBMISSION SUBJECTS
ssSelect = "SELECT documentsubjects,documentsubjects_order from submission_subjects WHERE jpasubmissionimpl_id = %s ORDER BY documentsubjects_order;" % [submission_id]
# puts "SUBMISSION SUBJECTS SELECT "+ssSelect;
v3_ssRS = VIREO::CON_V3.exec ssSelect
v3_ssRS.each do |ss|
updateSFVUtility(submission_id, "dc.subject", ss['documentsubjects']);
end
end
def getNewContributorRole(roles)
puts "ANCR SHOULD BE ENTERED ONLY ONCE"
String contigRoleString = roles.gsub(' ', '')
puts "ANCR CONTIG " + contigRoleString
String new_field_predicate = "dc.contributor"
if (contigRoleString.include?("Advisor"))
new_field_predicate += ".advisor."
elsif (contigRoleString.include?("Director"))
new_field_predicate += ".advisor."
elsif (contigRoleString.include?("Chair"))
new_field_predicate += ".advisor."
elsif (contigRoleString.include?("Supervisor"))
new_field_predicate += ".advisor."
else
new_field_predicate += ".committeeMember."
end
vp_id = 0
new_field_predicate += contigRoleString
return new_field_predicate;
end
def fieldValueExtras()
# get data from v4 since address will already have been parsed
fvSelect = "SELECT s.id, w.username, ci.email, cip.email AS permanent_email, ci.phone, cip.phone AS permanent_phone FROM submission s, weaver_users w, contact_info ci, contact_info cip WHERE s.submitter_id = w.id AND w.current_contact_info_id = ci.id AND w.permanent_contact_info_id = cip.id;"
v4_fvRS = VIREO::CON_V4.exec fvSelect
v4_fvRS.each do |fv|
puts "\n\nCONTACT###############################"
submission_id = fv['id'].to_s
current_email = fv['email'].to_s
permanent_email = fv['permanent_email'].to_s
current_phone = fv['phone'].to_s
permanent_phone = fv['permanent_phone'].to_s
puts "SUBM ID " + submission_id + " CURR EMAIL " + current_email + " PERM EMAIL " + permanent_email + " CURR PHONE " + current_phone + " PERM PHONE " + permanent_phone
updateSFVUtility(submission_id, "email", current_email)
updateSFVUtility(submission_id, "permanent_email", permanent_email)
updateSFVUtility(submission_id, "current_phone", current_phone)
updateSFVUtility(submission_id, "permanent_phone", permanent_phone)
end
# #address in single text blob format
fvaSelect = "SELECT s.id, p.currentpostaladdress, p.permanentpostaladdress FROM person p, submission s WHERE s.submitter_id = p.id;"
v3_fvaRS = VIREO::CON_V3.exec fvaSelect
v3_fvaRS.each do |fva|
puts "\n\nADDRESS###############################"
submission_id = fva['id'].to_s
current_address = fva['currentpostaladdress'].to_s
permanent_address = fva['permanentpostaladdress'].to_s
puts "ID " + submission_id + " CURR ADDR " + current_address + " PERM ADDR " + permanent_address
if ((current_address != nil) && (current_address.length > 0))
updateSFVUtility(submission_id, "current_address", current_address)
end
if ((permanent_address != nil) && (permanent_address.length > 0))
updateSFVUtility(submission_id, "permanent_address", permanent_address)
end
end
return "DONE FieldValueExtras"
end
#########################
# ##FileUpload
# #V3 files are in /ebs/vireo/data/attachments/ with 4 deep subdirectories representing the 4 pairs of the first part of the file hash
## Files are found by the submission_id on the attachment table. The filename and mime type are in the name field separated by '|'
# #V4 files uses java hashCode() on the email address to determine directory under:
## documentPath = "/opt/vireo/"
## dest_subdir = "private/'
##
## license files are put in documentPath+hash_of_email_addr+"/"+System.currenTimeMillis()+"-"+filename+".txt"
## as done in model/repo/impl/SubmissionRepoImpl.java
##
## primary files are put in documentPath+hash_of_email_addr+"/"+System.currenTimeMillis()+"-"+lastname.upcase+"-"+"PRIMARY"+"-"+current_calendar_year+mime_type (e.g.".pdf")
## as done in controller/SubmissionController.java
## the url 'private/hash/[timestamp]-[name]-PRIMARY-[YEAR].pdf is stored in table field_value with field_predicate_id = 4
##
##
##
# #if you need to cd into a dir with a '-' prefix use
## cd -- "-19383038"
##
# #type might correspond to field_predicate value
## type 0 - mods.xml sword.xml
## type 1 - primary
## type 2 -mpeg-4, ppt, mpg
## type 3 - license.txt
## type 4 - primary archived?
## type 5 - submission_log.csv
## type 6 - electronic thesis submission checklist
##
##
##
## show directory size
## du -sh [dirname]
## show system space
## df -hT
##
def fileUpload()
test_path = getJavaHash("nobody@example.com")
if (test_path.to_i == -1)
puts "hash.java needs to be compiled"
return "hash.java needs to be compiled"
end
subSelect = "SELECT s.id,s.depositurl,w.email,w.last_name from submission s, weaver_users w WHERE s.submitter_id = w.id;"
v4_subRS = VIREO::CON_V4.exec subSelect
puts "V4 SUBMISSIONS LIST OF " + v4_subRS.count.to_s
# puts "COPY FROM "+VIREO::BASE_DIR_V3+" TO "+VIREO::BASE_DIR_V4+"/"+VIREO::DEST_SUBDIR
totalExpected = v4_subRS.count.to_i
completed = 0
v4_subRS.each do |sub|
v4submission_id = sub['id']
v4email = sub['email']
v4lastname = sub['last_name']
puts "\n======================================================"
puts "TOTAL FILEUPLOAD EXPECTED SUBMISSIONS " + totalExpected.to_s + " STARTING " + completed.to_s
puts " V4 SUB ID " + sub['id'].to_s + " " + sub['depositurl'].to_s
# find filename in V3 submission
attachSelect = "SELECT submission_id,type,data,name,date from attachment WHERE submission_id = %s;" % [v4submission_id.to_s]
v3_attachRS = VIREO::CON_V3.exec attachSelect
v3_attachRS.each do |attach|
type_string = attach['type'].to_s
data_string = attach['data'].to_s
name_string = attach['name'].to_s
ds_array = data_string.split("|")
doc_id = ds_array[0].to_s
doc_mt = ds_array[1].to_s
v3path = doc_id[0..1] + "/" + doc_id[2..3] + "/" + doc_id[4..5] + "/" + doc_id[6..7] + "/" + doc_id
src_path = VIREO::BASE_DIR_V3 + v3path
if (File.file?(src_path))
src_date = File.mtime(src_path)
src_size = File.size(src_path)
puts "++++++++++"
puts "V3 LOCAL SOURCE DATE " + src_date.to_s + " SIZE " + src_size.to_s + " FILE " + src_path.to_s
dest_path = VIREO::DEST_SUBDIR + getJavaHash(v4email) + "/"
begin
FileUtils.mkdir_p(VIREO::BASE_DIR_V4 + dest_path)
rescue StandardError => e
puts "FILE MKDIR ERR " + e.message
end
dest_filename = nil
dest_filename_type1base = nil
if (type_string == "1")
year_string = Date.today.year.to_s
time_in_millis = DateTime.now.strftime('%Q').to_s
file_suffix = getSuffixFromMimeType(doc_mt, name_string)
dest_filename_type1base = "-" + v4lastname.upcase + "-" + "PRIMARY" + "-" + year_string + "-" + type_string + file_suffix
dest_filename = time_in_millis + dest_filename_type1base
else
dest_filename = name_string
end
fieldPredicateString = "_doctype_unknown";
if (type_string == "0")
fieldPredicateString = "_doctype_administrative";
elsif (type_string == "1")
fieldPredicateString = "_doctype_primary";
elsif (type_string == "2")
fieldPredicateString = "_doctype_supplemental";
elsif (type_string == "3")
fieldPredicateString = "_doctype_license";
elsif (type_string == "4")
fieldPredicateString = "_doctype_archived";
elsif (type_string == "5")
fieldPredicateString = "_doctype_source";
elsif (type_string == "6")
fieldPredicateString = "_doctype_administrative";
elsif (type_string == "7")
fieldPredicateString = "_doctype_feedback";
end
puts " LOCAL DEST_FILENAME " + dest_filename + " FIELDPRED " + fieldPredicateString
begin
look_for = File.join(VIREO::BASE_DIR_V4, dest_path, "*#{dest_filename}")
if (type_string == "1")
look_for = File.join(VIREO::BASE_DIR_V4, dest_path, "*#{dest_filename_type1base}")
end
puts "LOOKING FOR " + look_for.to_s
find_file = Dir[look_for]
copy_file = false
file_present = false
if ((find_file != nil) && (find_file.count > 0))
find_file.each do |f|
found_file_date = File.mtime(f)
found_file_size = File.size(f)
found_file_name = File.basename(f)
file_present = true
puts " FOUND: " + f.to_s
# puts " SIZE FOUND: "+found_file_size.to_s+" SRC "+src_size.to_s
# puts " DATE FOUND: "+found_file_date.to_s+" SRC "+src_date.to_s
if ((found_file_date < src_date) || (src_size != found_file_size))
puts " !!!!OUTDATED"
copy_file = true
else
puts " !!!!NOT OUTDATED"
puts "FOUND NAME " + found_file_name
updateSFVUtility(
v4submission_id, fieldPredicateString, dest_path + found_file_name
);
end
end
else
puts " !!! NOT FOUND "
copy_file = true
end
puts "FILE COPY: " + src_path + " TO " + VIREO::BASE_DIR_V4 + dest_path + dest_filename + " FIELDPRED " + fieldPredicateString
if (copy_file)
FileUtils.cp(src_path, VIREO::BASE_DIR_V4 + dest_path + dest_filename)
updateSFVUtility(v4submission_id, fieldPredicateString, dest_path + dest_filename);
file_present = true
puts " !!! SO FILE COPIED "
else
puts " !!! NOT COPIED "
end
# if(file_present)
# updateSFVUtility(v4submission_id,fieldPredicateString,dest_path+dest_filename);
# end
rescue StandardError => e
puts "FIELD PREDICATE STRING " + e.message
end
puts "----------"
else
# files often not found in testing as whole setup not present
puts "++++++++++"
puts " V3 CANNOT FIND FILE AT " + src_path.to_s
puts "----------"
end
end
completed += 1
end
return "complete"
end
def getJavaHash(email_addr)
# java's hashCode() uses a different algorithm than ruby hash so we call a java implementation
cmd = "java hash %s" % [email_addr]
# puts "CMD "+cmd
stdout_str, stderr_str, status = Open3.capture3(cmd)
if (status.success?)
return stdout_str.to_s
else
return "-1"
end
end
def getSuffixFromMimeType(doc_mt, name)
# doc_mt.slice! "charset=utf-8"
file_suffix = ".nil"
if (doc_mt == nil)
file_suffix = ".nil"
elsif (doc_mt.start_with?("application/pdf"))
file_suffix = ".pdf"
elsif (doc_mt.start_with?("text/plain"))
file_suffix = ".txt"
elsif (doc_mt.start_with?("video/quicktime"))
file_suffix = ".mov"
elsif (doc_mt.start_with?("application/octet-stream"))
# use suffix from doc
sffx = name.split(".")
if ((sffx != nil) && (sffx.size > 1))
file_suffix = "." + sffx[1]
else
file_suffix = ".doc"
end
elsif (doc_mt.start_with?("application/mspowerpoint"))
file_suffix = ".ppt"
elsif (doc_mt.start_with?("image/jpeg"))
file_suffix = ".jpeg"
elsif (doc_mt.start_with?("image/jpg"))
file_suffix = ".jpg"
elsif (doc_mt.start_with?("video/mp4"))
file_suffix = ".mp4"
elsif (doc_mt.start_with?("video/mpeg"))
file_suffix = ".mpg"
elsif (doc_mt.start_with?("video/x-msvideo"))
file_suffix = ".avi"
elsif (doc_mt.start_with?("text/xml"))
file_suffix = ".xml"
elsif (doc_mt.start_with?("application/vnd.oasis.opendocument.text"))
file_suffix = ".odt"
elsif (doc_mt.start_with?("application/vnd.openxmlformats-officedocument.wordprocessingml.document"))
file_suffix = ".docx"
elsif (doc_mt.start_with?("application/zip"))
file_suffix = ".zip"
elsif (doc_mt.start_with?("application/excel"))
file_suffix = ".xls"
else
file_suffix = ".UNK"
end
return file_suffix
end
# ##FileUpload
#########################
def updateSFVUtility(submission_id, fieldName, fieldValue)
if (fieldValue == nil)
puts "SFVU FN " + fieldName + " IS NULL FOR SUB ID " + submission_id.to_s
fieldValue = "UNKNOWN"
return
else
fieldValue = VIREO::CON_V4.escape_string(fieldValue)
end
pid = findPredicateId(fieldName)
puts "SFVUTIL ID " + submission_id.to_s + " FN " + fieldName + " PRED_ID " + pid.to_s + " VAL " + fieldValue
# _doctype_primary = 4
puts "DUP PRED IN SFVU " + @@duplicateFieldPredicateList.to_s
if (pid > 0)
# SEE IF THERE IS A field_value AND submission ASSOCIATION FOR THE GIVEN pid
fvid = findFieldValueId(submission_id, pid)
if (fvid < 1)
fvid = createFieldValue('null', 'null', fieldValue, pid, fieldName)
puts " FIELD DOES NOT ALREADY EXIST: create " + fvid.to_s
if (fvid > 0)
createSubmissionFieldValues(submission_id, fvid)
end
elsif (@@duplicateFieldPredicateList.include? pid)
fvid = findFieldValueIdByValue(submission_id, pid, fieldValue)
puts " FIELD IS A DUPLICATE AS PERMITTED: find " + fvid.to_s
if (fvid < 1)
fvid = createFieldValue('null', 'null', fieldValue, pid, fieldName)
puts " FIELD IS < 1 : create " + fvid.to_s
if (fvid > 0)
createSubmissionFieldValues(submission_id, fvid)
end
end
else
puts " FIELD CAN ONLY BE UPDATED NOT DUPLICATED"
updateFieldValue(fvid, fieldValue)
end
end
end
def findFieldValueIdByValue(submission_id, pid, fieldValue)
fvidSelect = "SELECT fv.id FROM field_value fv, submission_field_values sfv WHERE sfv.submission_id = %s AND sfv.field_values_id = fv.id AND fv.field_predicate_id = %s AND fv.value = '%s';" % [
submission_id.to_s, pid.to_s, fieldValue
]
begin
v4_fvidRS = VIREO::CON_V4.exec fvidSelect
return v4_fvidRS[0]['id'].to_i
rescue
return -1
end
end
def findFieldValueId(submission_id, pid)
fvidSelect = "SELECT fv.id FROM submission_field_values sfv,field_value fv WHERE sfv.field_values_id = fv.id AND fv.field_predicate_id = %s AND sfv.submission_id = %s;" % [
pid, submission_id
]
begin
v4_fvidRS = VIREO::CON_V4.exec fvidSelect
return v4_fvidRS[0]['id'].to_i
rescue
return -1
end
end
def findPredicateId(field_name)
predicateSelect = "SELECT id FROM field_predicate WHERE value = '%s';" % [field_name]
begin
v4_predRS = VIREO::CON_V4.exec predicateSelect
return v4_predRS[0]['id'].to_i
rescue
return -1
end
end
def updateFieldValue(field_value_id, newvalue)
vf_id = 0
if (VIREO::REALRUN)
fvUpdate = "UPDATE field_value SET value = '%s' WHERE id = %s;" % [newvalue, field_value_id.to_s]
begin
v4_fvRS = VIREO::CON_V4.exec fvUpdate
# puts " V4 UPDATED FIELD VALUE ID "+v4_fvRS[0]['id'].to_s+" "+fvUpdate;
vf_id = 1
rescue StandardError => e
puts " TYPICALLY BECAUSE VALUE IS NOT UNIQUE VALUE:" + value
puts " V4 FAILED FIELD VALUE " + fvUpdate + " ERR " + e.message
vf_id = -1
end
end
return vf_id
end
def createFieldValue(definition, identifier, value, field_predicate_id, field_name)
fvFind = "SELECT id FROM field_value WHERE value='%s' AND field_predicate_id=%s;" % [value, field_predicate_id]
v4_fvF = VIREO::CON_V4.exec fvFind
# valueDisp = value
# if(valueDisp.length >75)
# valueDisp = valueDisp[0,24]
# end
puts "\t" + field_predicate_id.to_s + ": " + field_name
# if((v4_fvF!=nil)&&(v4_fvF.count > 0))
# fv_id = v4_fvF[0]['id'].to_i
# puts "\t\tFOUND field_value.value "+valueDisp
# return fv_id
# else
vf_id = 0
if (VIREO::REALRUN)
fvInsert = "INSERT INTO field_value (id,value,field_predicate_id) VALUES(DEFAULT,'%s',%s) RETURNING id;" % [value,
field_predicate_id]
puts "FIELD_VALUE \t\t" + fvInsert
begin
v4_fvRS = VIREO::CON_V4.exec fvInsert
puts " V4 CREATED FIELD VALUE ID " + v4_fvRS[0]['id'].to_s + " " + fvInsert;
vf_id = v4_fvRS[0]['id'].to_i
rescue StandardError => e
puts " TYPICALLY BECAUSE VALUE IS NOT UNIQUE VALUE:" + value
puts " V4 FAILED FIELD VALUE " + fvInsert + " ERR " + e.message
vf_id = -1
end
end
return vf_id
# end
end
def createSubmissionFieldValues(submission_id, field_values_id)
sfvFind = "SELECT * FROM submission_field_values WHERE submission_id=%s AND field_values_id=%s;" % [submission_id,
field_values_id]
v4_sfvF = VIREO::CON_V4.exec sfvFind
if ((v4_sfvF != nil) && (v4_sfvF.count > 0))
sfv_id = v4_sfvF[0]['submission_id'].to_i
puts " V4 FOUND SUBMISSION_FIELD_VALUES FOR SUBMISSION " + sfv_id.to_s
else
if (VIREO::REALRUN)
sfvInsert = "INSERT INTO submission_field_values (submission_id,field_values_id) VALUES(%s,%s);" % [submission_id,
field_values_id]
begin
v4_sfvRS = VIREO::CON_V4.exec sfvInsert
puts " " + sfvInsert
puts " V4 CREATED SUBMISSION_FIELD_VALUES FOR SUBMISSION"
rescue StandardError => e
puts " V4 CREATE SUBMISSION_FIELD_VALUE FAILED " + sfvInsert + " ERR " + e.message;
end
end
end
end
def updateSubmissionDates(submission_id, submission_date, approve_application_date)
ret_sub_id = 0