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gecko.py: constrain_pool() not working with cobra 0.17.1 version #94

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sousamd opened this issue Feb 3, 2020 · 0 comments
Open

gecko.py: constrain_pool() not working with cobra 0.17.1 version #94

sousamd opened this issue Feb 3, 2020 · 0 comments
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bug gecko1-2 Issues related to GECKO version 1 and/or 2 geckopy

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@sousamd
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sousamd commented Feb 3, 2020

This line (213) on gecko.py

protein_pool = self.metabolites.get_by_id('prot_{}_c'.format(protein_id))

should be

protein_pool = self.metabolites.get_by_id('prot_{}[c]'.format(protein_id))

This is not a problem with cobra 0.15.1. Don't know about 0.16.

@edkerk edkerk added the gecko1-2 Issues related to GECKO version 1 and/or 2 label Mar 5, 2023
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Labels
bug gecko1-2 Issues related to GECKO version 1 and/or 2 geckopy
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