A place for quick conversions between languages using SMILES as the base key. A Quick Converter From Amino Acid Sequences to Smiles and Back again.
ChemistryAdapters is going to be distribute via PyPi and as the content store grows we can expand it to other pieces of software making it accessible to all regardless of what you use. Alternatively, you could have a glance at the source code and copy/paste it yourself.
pip install chemistry-adapters
Currently only one adapter is implemented which is the Amino Acids to SMILES and back again.
from chemistry_adapters.amino_acids import AminoAcidAdapter
test = 'RSTEFGHIKLADPQ'
adapter = AminoAcidAdapter()
smiles = adapter.convert_amino_acid_sequence_to_smiles(test)
>>> NC(CCCCNC(N)=N)C(NC(CO)C(NC(C(C)([H])O)C(NC(CCC(O)=O)C(NC(CC1=CC=CC=C1)C(NC([H])C(NC(CC1=CNC=N1)C(NC(C(CC)([H])C)C(NC(CCCCN)C(NC(CC(C)C)C(NC(C)C(NC(CC(O)=O)C(NC(C2CCCN2)C(NC(CCC(N)=O)C(NCC(O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O
sequence = adapter.convert_smiles_to_amino_acid_sequence(smiles)
>>> RSTEFGHIKLADPQI demonstrated I have a need for this so I built a quick one.
- Lead Developer Suliman sharif
Sul: "ChemistryAdapters"