/
BCBetweenArray.cpp
763 lines (683 loc) · 26 KB
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BCBetweenArray.cpp
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/*
**
* BEGIN_COPYRIGHT
*
* Copyright (C) 2008-2015 SciDB, Inc.
* All Rights Reserved.
*
* SciDB is free software: you can redistribute it and/or modify
* it under the terms of the AFFERO GNU General Public License as published by
* the Free Software Foundation.
*
* SciDB is distributed "AS-IS" AND WITHOUT ANY WARRANTY OF ANY KIND,
* INCLUDING ANY IMPLIED WARRANTY OF MERCHANTABILITY,
* NON-INFRINGEMENT, OR FITNESS FOR A PARTICULAR PURPOSE. See
* the AFFERO GNU General Public License for the complete license terms.
*
* You should have received a copy of the AFFERO GNU General Public License
* along with SciDB. If not, see <http://www.gnu.org/licenses/agpl-3.0.html>
*
* END_COPYRIGHT
*/
/**
* @file BetweenArray.cpp
*
* @brief Between array implementation
*
* @author Konstantin Knizhnik <knizhnik@garret.ru>
*/
#include "BCBetweenArray.h"
#include <system/Exceptions.h>
#include <util/SpatialType.h>
#include <system/Utils.h>
namespace scidb
{
using namespace boost;
std::string coordinateToString(Coordinates const& coor)
{
std::ostringstream oss;
oss << "[";
for(int i = 0; i < coor.size(); i++)
{
oss << coor[i];
if(i != coor.size() - 1)
{
oss << ",";
}
}
oss << "]";
return oss.str();
}
//
// Between _chunk methods
//
std::shared_ptr<ConstChunkIterator> BCBetweenChunk::getConstIterator(int iterationMode) const
{
BCBetweenArrayIterator arrayIterator = (BCBetweenArrayIterator const&)getArrayIterator();
AttributeDesc const& attr = getAttributeDesc();
// TileMode is false.
// Defined in BCBetweenChunk::BCBetweenChunk
if (tileMode/* && chunk->isRLE()*/)
{
iterationMode |= ChunkIterator::TILE_MODE;
} else
{
iterationMode &= ~ChunkIterator::TILE_MODE;
}
iterationMode &= ~ChunkIterator::INTENDED_TILE_MODE;
return std::shared_ptr<ConstChunkIterator>(
attr.isEmptyIndicator()
? (attrID >= _array.getInputArray()->getArrayDesc().getAttributes().size())
? _fullyInside
? (ConstChunkIterator*)new EmptyBitmapBCBetweenChunkIterator(arrayIterator, *this, iterationMode & ~ConstChunkIterator::IGNORE_DEFAULT_VALUES)
: (ConstChunkIterator*)new NewBitmapBCBetweenChunkIterator(arrayIterator, *this, iterationMode & ~ConstChunkIterator::IGNORE_DEFAULT_VALUES)
: _fullyInside
? (ConstChunkIterator*)new DelegateChunkIterator(this, iterationMode & ~ConstChunkIterator::IGNORE_DEFAULT_VALUES)
: (ConstChunkIterator*)new ExistedBitmapBCBetweenChunkIterator(arrayIterator, *this, iterationMode & ~ConstChunkIterator::IGNORE_DEFAULT_VALUES)
: _fullyInside
? (ConstChunkIterator*)new DelegateChunkIterator(this, iterationMode)
: (ConstChunkIterator*)new BCBetweenChunkIterator(arrayIterator, *this, iterationMode));
}
BCBetweenChunk::BCBetweenChunk(BCBetweenArray const& arr, DelegateArrayIterator const& iterator, AttributeID attrID)
: DelegateChunk(arr, iterator, attrID, false),
_array(arr),
_myRange(arr.getArrayDesc().getDimensions().size()),
_fullyInside(false),
_fullyOutside(false)
{
tileMode = false;
}
void BCBetweenChunk::setInputChunk(ConstChunk const& inputChunk)
{
DelegateChunk::setInputChunk(inputChunk);
_myRange._low = inputChunk.getFirstPosition(true);
_myRange._high = inputChunk.getLastPosition(true);
// TO-DO: the _fullyInside computation is simple but not optimal.
// It is possible that the current _chunk is fully inside the union of the specified ranges,
// although not fully contained in any of them.
size_t dummy = 0;
_fullyInside = _array._innerSpatialRnagesPtr->findOneThatContains(_myRange, dummy);
_fullyOutside = !_array._spatialRangesPtr->findOneThatIntersects(_myRange, dummy);
isClone = _fullyInside && attrID < _array.getInputArray()->getArrayDesc().getAttributes().size();
if (_emptyBitmapIterator)
{
if (!_emptyBitmapIterator->setPosition(inputChunk.getFirstPosition(false)))
throw USER_EXCEPTION(SCIDB_SE_EXECUTION, SCIDB_LE_OPERATION_FAILED) << "setPosition";
}
}
inline Value& BCBetweenChunkIterator::evaluate()
{
for (size_t i = 0, n = _array.bindings.size(); i < n; i++)
{
switch (_array.bindings[i].kind)
{
case BindInfo::BI_ATTRIBUTE:
{
_params[i] = _iterators[i]->getItem();
break;
}
case BindInfo::BI_COORDINATE:
{
_params[i].setInt64(inputIterator->getPosition()[_array.bindings[i].resolvedId]);
break;
}
default:
break;
}
}
return const_cast<Value&>(_array.expression->evaluate(_params));
}
inline bool BCBetweenChunkIterator::filter()
{
if(_array._innerSpatialRnagesPtr->findOneThatContains(_curPos, _hintForSpatialRanges))
{
return true;
}
if(_array._spatialRangesPtr->findOneThatContains(_curPos, _hintForSpatialRanges))
{
Value const& result = evaluate();
return !result.isNull() && result.getBool();
}
return false;
}
Value const& BCBetweenChunkIterator::getItem()
{
if (!_hasCurrent)
{
throw USER_EXCEPTION(SCIDB_SE_EXECUTION, SCIDB_LE_NO_CURRENT_ELEMENT);
}
return inputIterator->getItem();
}
bool BCBetweenChunkIterator::isEmpty() const
{
if (!_hasCurrent)
{
throw USER_EXCEPTION(SCIDB_SE_EXECUTION, SCIDB_LE_NO_CURRENT_ELEMENT);
}
return inputIterator->isEmpty() ||
!_array._spatialRangesPtr->findOneThatContains(_curPos, _hintForSpatialRanges);
}
bool BCBetweenChunkIterator::end()
{
return !_hasCurrent;
}
void BCBetweenChunkIterator::operator ++()
{
advancedMoveNext();
}
void BCBetweenChunkIterator::moveNext()
{
++(*inputIterator);
if (!inputIterator->end())
{
for (size_t i = 0, n = _iterators.size(); i < n; i++)
{
if (_iterators[i] && _iterators[i] != inputIterator)
{
++(*_iterators[i]);
}
}
_curPos = inputIterator->getPosition();
}
}
void BCBetweenChunkIterator::advancedMoveNext()
{
moveNext();
if(_ignoreEmptyCells)
{
nextVisible();
}
}
void BCBetweenChunkIterator::nextVisible()
{
while(!inputIterator->end())
{
if(filter())
{
_hasCurrent = true;
return;
}
moveNext();
}
_hasCurrent = false;
}
Coordinates const& BCBetweenChunkIterator::getPosition()
{
return _ignoreEmptyCells ? _curPos : inputIterator->getPosition();
}
bool BCBetweenChunkIterator::setPosition(Coordinates const& targetPos)
{
if(inputIterator->setPosition(targetPos))
{
for (size_t i = 0, n = _iterators.size(); i < n; i++)
{
if (_iterators[i] && _iterators[i] != inputIterator)
{
if (!_iterators[i]->setPosition(targetPos))
throw USER_EXCEPTION(SCIDB_SE_EXECUTION, SCIDB_LE_OPERATION_FAILED) << "setPosition";
}
}
_curPos = targetPos;
_hasCurrent = filter();
if (_ignoreEmptyCells)
{
nextVisible();
}
return _hasCurrent;
} else
{
_hasCurrent = false;
return _hasCurrent;
}
}
void BCBetweenChunkIterator::restart()
{
inputIterator->restart();
if (!inputIterator->end())
{
for (size_t i = 0, n = _iterators.size(); i < n; i++)
{
if (_iterators[i] && _iterators[i] != inputIterator)
{
_iterators[i]->restart();
}
}
_curPos = inputIterator->getPosition();
}
nextVisible();
}
ConstChunk const& BCBetweenChunkIterator::getChunk()
{
return _chunk;
}
BCBetweenChunkIterator::BCBetweenChunkIterator(BCBetweenArrayIterator const& arrayIterator,
BCBetweenChunk const& aChunk, int iterationMode)
: CoordinatesMapper(aChunk), DelegateChunkIterator(&aChunk, iterationMode),
_array(aChunk._array),
_chunk(aChunk),
_iterators(_array.bindings.size()),
_curPos(_array.getArrayDesc().getDimensions().size()),
_mode(iterationMode & ~INTENDED_TILE_MODE & ~TILE_MODE),
_ignoreEmptyCells((iterationMode & IGNORE_EMPTY_CELLS) == IGNORE_EMPTY_CELLS),
_type(_chunk.getAttributeDesc().getType()),
_hintForSpatialRanges(0),
_params(*_array.expression),
_query(Query::getValidQueryPtr(_array._query))
{
inputIterator = aChunk.getInputChunk().getConstIterator(iterationMode & ~INTENDED_TILE_MODE);
for (size_t i = 0, n = _array.bindings.size(); i < n; i++) {
switch (_array.bindings[i].kind) {
case BindInfo::BI_COORDINATE:
{
// if iterator is tile mode, then do something
break;
}
case BindInfo::BI_ATTRIBUTE:
{
if ((AttributeID)_array.bindings[i].resolvedId == arrayIterator._inputAttrID)
{
_iterators[i] = inputIterator;
} else
{
_iterators[i] = arrayIterator._iterators[i]->getChunk().getConstIterator(IGNORE_EMPTY_CELLS);
}
break;
}
case BindInfo::BI_VALUE:
{
_params[i] = _array.bindings[i].value;
break;
}
default:
break;
}
}
restart();
nextVisible();
}
//
// Exited bitmap _chunk iterator methods
//
Value const& ExistedBitmapBCBetweenChunkIterator::getItem()
{
_value.setBool(
inputIterator->getItem().getBool() && filter()
);
return _value;
}
ExistedBitmapBCBetweenChunkIterator::ExistedBitmapBCBetweenChunkIterator(BCBetweenArrayIterator const& arrayIterator, BCBetweenChunk const& chunk, int iterationMode)
: BCBetweenChunkIterator(arrayIterator, chunk, iterationMode),
_value(TypeLibrary::getType(TID_BOOL))
{
}
//
// New bitmap _chunk iterator methods
//
Value const& NewBitmapBCBetweenChunkIterator::getItem()
{
_value.setBool(_array._spatialRangesPtr->findOneThatContains(_curPos, _hintForSpatialRanges));
if(_value.getBool())
{
return evaluate();
}
return _value;
}
NewBitmapBCBetweenChunkIterator::NewBitmapBCBetweenChunkIterator(BCBetweenArrayIterator const& arrayIterator, BCBetweenChunk const& chunk, int iterationMode)
: BCBetweenChunkIterator(arrayIterator, chunk, iterationMode),
_value(TypeLibrary::getType(TID_BOOL))
{
}
//
// Empty bitmap _chunk iterator methods
//
Value const& EmptyBitmapBCBetweenChunkIterator::getItem()
{
return _value;
}
bool EmptyBitmapBCBetweenChunkIterator::isEmpty() const
{
return false;
}
EmptyBitmapBCBetweenChunkIterator::EmptyBitmapBCBetweenChunkIterator(BCBetweenArrayIterator const& arrayIterator, BCBetweenChunk const& chunk, int iterationMode)
: NewBitmapBCBetweenChunkIterator(arrayIterator, chunk, iterationMode)
{
_value.setBool(true);
}
//
// BCBetweenArrayEmptyBitmapIterator methods
//
ConstChunk const& BCBetweenArrayEmptyBitmapIterator::getChunk()
{
chunk = _array.getEmptyBitmapChunk(this);
return *chunk->materialize();
}
BCBetweenArrayEmptyBitmapIterator::BCBetweenArrayEmptyBitmapIterator(BCBetweenArray const& arr, AttributeID outAttrID, AttributeID inAttrID)
: BCBetweenArrayIterator(arr, outAttrID, inAttrID),
_array((BCBetweenArray&)arr)
{}
//
// Between _array iterator methods
//
BCBetweenArrayIterator::BCBetweenArrayIterator(BCBetweenArray const& arr, AttributeID attrID, AttributeID inputAttrID)
: DelegateArrayIterator(arr, attrID, arr.getInputArray()->getConstIterator(inputAttrID)),
_array(arr),
_curPos(arr.getArrayDesc().getDimensions().size()),
_hintForSpatialRanges(0),
_iterators(arr.bindings.size()),
_inputAttrID(inputAttrID)
{
_spatialRangesChunkPosIteratorPtr = std::shared_ptr<SpatialRangesChunkPosIterator>(
new SpatialRangesChunkPosIterator(_array._spatialRangesPtr, _array.getArrayDesc()));
for (size_t i = 0, n = _iterators.size(); i < n; i++)
{
switch (_array.bindings[i].kind)
{
case BindInfo::BI_ATTRIBUTE:
{
if ((AttributeID)_array.bindings[i].resolvedId == inputAttrID)
{
_iterators[i] = inputIterator;
} else
{
_iterators[i] = _array.getInputArray()->
getConstIterator(safe_static_cast<AttributeID>(_array.bindings[i].resolvedId));
}
break;
}
case BindInfo::BI_COORDINATE:
{
// If tilemode, do something.
break;
}
default:
break;
}
}
restart();
}
bool BCBetweenArrayIterator::end()
{
return !_hasCurrent;
}
Coordinates const& BCBetweenArrayIterator::getPosition()
{
if (!_hasCurrent)
throw USER_EXCEPTION(SCIDB_SE_EXECUTION, SCIDB_LE_NO_CURRENT_ELEMENT);
return _curPos;
}
bool BCBetweenArrayIterator::setPosition(Coordinates const& newPos)
{
Coordinates newChunkPos = newPos;
_array.getArrayDesc().getChunkPositionFor(newChunkPos);
if (_hasCurrent && _curPos == newChunkPos) {
return true;
}
// If the position does not correspond to a _chunk intersecting some query range, fail.
if (!_array._extendedSpatialRangesPtr->findOneThatContains(newChunkPos, _hintForSpatialRanges))
{
_hasCurrent = false;
return false;
}
// Set position there.
_hasCurrent = true;
chunkInitialized = false;
_curPos = newChunkPos;
if (_spatialRangesChunkPosIteratorPtr->end() || _spatialRangesChunkPosIteratorPtr->getPosition() > _curPos)
{
_spatialRangesChunkPosIteratorPtr->restart();
}
_spatialRangesChunkPosIteratorPtr->advancePositionToAtLeast(_curPos);
assert(_spatialRangesChunkPosIteratorPtr->getPosition() == _curPos);
// Set all iterators position.
return setAllIteratorsPosition(_curPos);
}
ConstChunk const& BCBetweenArrayIterator::getChunk()
{
chunk->setInputChunk(inputIterator->getChunk());
chunk->overrideClone(false);
return *chunk;
}
void BCBetweenArrayIterator::moveNext()
{
chunkInitialized = false;
++(*inputIterator);
for (size_t i = 0, n = _iterators.size(); i < n; i++)
{
if (_iterators[i] && _iterators[i] != inputIterator)
{
++(*_iterators[i]);
}
}
if (_emptyBitmapIterator)
{
++(*_emptyBitmapIterator);
}
}
void BCBetweenArrayIterator::advanceToNextChunkInRange()
{
assert(!inputIterator->end() && !_spatialRangesChunkPosIteratorPtr->end());
_hasCurrent = false;
chunkInitialized = false;
while (!inputIterator->end())
{
// Increment _inputIterator.
moveNext();
if (inputIterator->end())
{
assert(_hasCurrent == false);
return;
}
_curPos = inputIterator->getPosition();
if (_array._extendedSpatialRangesPtr->findOneThatContains(_curPos, _hintForSpatialRanges))
{
_hasCurrent = true;
_spatialRangesChunkPosIteratorPtr->advancePositionToAtLeast(_curPos);
assert(_spatialRangesChunkPosIteratorPtr->getPosition() == _curPos);
return;
}
// Incrementing _inputIterator led to a position outside the spatial ranges.
// We could keep incrementing _inputIterator till we find a chunkPos inside a query range, but that
// can be too slow.
// So let's try to increment spatialRangesChunkPosIterator also, in every iteration.
// Whenever one of them (_inputIterator or spatialRangesChunkPosIterator) gets there first
// (i.e. finds a position the other one "like"), the algorithm declares victory.
//
// Another note:
// If advancePositionToAtLeast(_curPos) advances to a position > _curPos, we cannot increment spatialRangesChunkPosIterator.
// The reason is that this new position has not been checked against _inputIterator for validity yet, and it will
// be a mistake to blindly skip it.
//
bool advanced = _spatialRangesChunkPosIteratorPtr->advancePositionToAtLeast(_curPos);
if (_spatialRangesChunkPosIteratorPtr->end())
{
assert(_hasCurrent == false);
return;
}
if (! (advanced && _spatialRangesChunkPosIteratorPtr->getPosition() > _curPos))
{
++(*_spatialRangesChunkPosIteratorPtr);
if (_spatialRangesChunkPosIteratorPtr->end())
{
assert(_hasCurrent == false);
return;
}
}
Coordinates const& myPos = _spatialRangesChunkPosIteratorPtr->getPosition();
if (inputIterator->setPosition(myPos))
{
setAllIteratorsPosition(myPos);
// The position suggested by _spatialRangesChunkPosIterator exists in _inputIterator.
// Declare victory!
_curPos = myPos;
_hasCurrent = true;
return;
} else
{
// The setPosition, even though unsuccessful, may brought inputInterator to a bad state.
// Restore to its previous valid state (even though not in any query range).
bool restored = inputIterator->setPosition(_curPos);
setAllIteratorsPosition(_curPos);
SCIDB_ASSERT(restored);
}
}
}
void BCBetweenArrayIterator::operator ++()
{
assert(!end());
assert(!inputIterator->end() && _hasCurrent && !_spatialRangesChunkPosIteratorPtr->end());
assert(_spatialRangesChunkPosIteratorPtr->getPosition() == inputIterator->getPosition());
advanceToNextChunkInRange();
}
void BCBetweenArrayIterator::restart()
{
chunkInitialized = false;
inputIterator->restart();
_spatialRangesChunkPosIteratorPtr->restart();
// If any of the two _iterators is invalid, fail.
if (inputIterator->end() || _spatialRangesChunkPosIteratorPtr->end())
{
_hasCurrent = false;
return;
}
// Is _inputIterator pointing to a position intersecting some query range?
_curPos = inputIterator->getPosition();
_hasCurrent = _array._extendedSpatialRangesPtr->findOneThatContains(_curPos, _hintForSpatialRanges);
if (_hasCurrent)
{
assert(_curPos >= _spatialRangesChunkPosIteratorPtr->getPosition());
if (_curPos > _spatialRangesChunkPosIteratorPtr->getPosition())
{
_spatialRangesChunkPosIteratorPtr->advancePositionToAtLeast(_curPos);
assert(!_spatialRangesChunkPosIteratorPtr->end() && _curPos == _spatialRangesChunkPosIteratorPtr->getPosition());
}
for (size_t i = 0, n = _iterators.size(); i < n; i++)
{
if (_iterators[i] && _iterators[i] != inputIterator)
{
_iterators[i]->restart();
}
}
if (_emptyBitmapIterator)
{
_emptyBitmapIterator->restart();
}
return;
}
// Is spatialRangesChunkPosIterator pointing to a position that has data?
Coordinates const& myPos = _spatialRangesChunkPosIteratorPtr->getPosition();
if (inputIterator->setPosition(myPos))
{
// The position suggested by _spatialRangesChunkPosIterator exists in _inputIterator.
// Declare victory!
setAllIteratorsPosition(myPos);
_curPos = myPos;
_hasCurrent = true;
return;
} else {
// The setPosition, even though unsuccessful, may brought inputInterator to a bad state.
// Restore to its previous valid state (even though not in any query range).
bool restored = inputIterator->setPosition(_curPos);
SCIDB_ASSERT(restored);
setAllIteratorsPosition(_curPos);
}
advanceToNextChunkInRange();
}
bool BCBetweenArrayIterator::setAllIteratorsPosition(Coordinates const &pos)
{
if(inputIterator->setPosition(pos))
{
for(size_t i = 0, n = _iterators.size(); i < n; i++)
{
if(_iterators[i])
{
if(!_iterators[i]->setPosition(pos))
throw USER_EXCEPTION(SCIDB_SE_EXECUTION, SCIDB_LE_OPERATION_FAILED) << "setPosition";
}
}
if(_emptyBitmapIterator)
{
if(!_emptyBitmapIterator->setPosition(pos))
throw USER_EXCEPTION(SCIDB_SE_EXECUTION, SCIDB_LE_OPERATION_FAILED) << "setPosition";
}
return true;
}
return false;
}
//
// Between _array methods
//
BCBetweenArray::BCBetweenArray(ArrayDesc const& array,
SpatialRangesPtr const& spatialRangesPtr,
SpatialRangesPtr const& innerSpatialRangesPtr,
std::shared_ptr<Array> const& input,
std::shared_ptr<Expression> expr,
std::shared_ptr<Query>& query,
bool tileMode)
: DelegateArray(array, input),
_spatialRangesPtr(spatialRangesPtr),
_innerSpatialRnagesPtr(innerSpatialRangesPtr),
expression(expr),
bindings(expr->getBindings()),
_tileMode(tileMode),
cacheSize(Config::getInstance()->getOption<int>(CONFIG_RESULT_PREFETCH_QUEUE_SIZE)),
emptyAttrID(desc.getEmptyBitmapAttribute()->getId())
{
assert(query);
_query = query;
// Copy _spatialRangesPtr to extendedSpatialRangesPtr, but reducing low by (interval-1) to cover chunkPos.
_extendedSpatialRangesPtr = make_shared<SpatialRanges>(_spatialRangesPtr->numDims());
auto const& ranges = _spatialRangesPtr->ranges();
for (size_t i=0; i < ranges.size(); ++i) {
Coordinates newLow = ranges[i]._low;
array.getChunkPositionFor(newLow);
_extendedSpatialRangesPtr->insert(SpatialRange(newLow, ranges[i]._high));
}
_extendedSpatialRangesPtr->buildIndex();
}
DelegateArrayIterator* BCBetweenArray::createArrayIterator(AttributeID attrID) const
{
AttributeID inputAttrID = attrID;
if (inputAttrID >= inputArray->getArrayDesc().getAttributes().size())
{
inputAttrID = 0;
for (size_t i = 0, n = bindings.size(); i < n; i++)
{
if (bindings[i].kind == BindInfo::BI_ATTRIBUTE)
{
inputAttrID = (AttributeID)bindings[i].resolvedId;
break;
}
}
}
return new BCBetweenArrayIterator(*this, attrID, inputAttrID);
}
DelegateChunk* BCBetweenArray::createChunk(DelegateArrayIterator const* iterator, AttributeID attrID) const
{
return new BCBetweenChunk(*this, *iterator, attrID);
}
std::shared_ptr<DelegateChunk> BCBetweenArray::getEmptyBitmapChunk(BCBetweenArrayEmptyBitmapIterator* iterator)
{
std::shared_ptr<DelegateChunk> chunk;
Coordinates const& pos = iterator->getPosition();
{
ScopedMutexLock cs(mutex);
chunk = cache[pos];
if (chunk)
{
return chunk;
}
}
chunk = std::shared_ptr<DelegateChunk>(createChunk(iterator, emptyAttrID));
chunk->setInputChunk(iterator->getInputIterator()->getChunk());
chunk->materialize();
{
ScopedMutexLock cs(mutex);
if (cache.size() >= cacheSize)
{
cache.erase(cache.begin());
}
cache[pos] = chunk;
}
return chunk;
}
}