{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":332545,"defaultBranch":"main","name":"RMG-Py","ownerLogin":"ReactionMechanismGenerator","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2009-10-09T21:16:17.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/12617462?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1716017046.0","currentOid":""},"activityList":{"items":[{"before":null,"after":"914745aecdb17dc6852c2b28948e594f7abcca58","ref":"refs/heads/external_kin_lib","pushedAt":"2024-05-18T07:24:06.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"alongd","name":"Alon Grinberg Dana","path":"/alongd","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16158262?s=80&v=4"},"commit":{"message":"Replace an external reaction library path with the library label\n\nwhen loading a library, since kinetic libraries are stored in database.kinetics.libraries by their labels","shortMessageHtmlLink":"Replace an external reaction library path with the library label"}},{"before":"6109d8bb1b4ab34d65c5e014d0e4e6f6e233fdb6","after":"119b48bfb1cb4cf0243e127153b1314dd0065320","ref":"refs/heads/pdep_fit_reverse","pushedAt":"2024-05-17T21:42:32.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"alongd","name":"Alon Grinberg Dana","path":"/alongd","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16158262?s=80&v=4"},"commit":{"message":"Send P in SI units to Chebyshev.fit_to_data() when reversing a rate\n\nThe Chebyshev.fit_to_data() method treats the Pmin and Pmax args as SI (Pa units), see here for example: `self.Pmin = (Pmin * 1e-5, \"bar\")`.\nMake sure we transmit the arguments in SI units and not in the arbitrary units they were defined in.","shortMessageHtmlLink":"Send P in SI units to Chebyshev.fit_to_data() when reversing a rate"}},{"before":"6a5ebf45f20627af9a66ddd02918d9947bf19670","after":"d426379b124324ff7c8e27864d06e8853260ddb7","ref":"refs/heads/main","pushedAt":"2024-05-17T21:00:41.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"JacksonBurns","name":"Jackson Burns","path":"/JacksonBurns","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/33505528?s=80&v=4"},"commit":{"message":"Merge pull request #2661 from rwest/debugdatabase\n\nBetter debugging messages for database errors.","shortMessageHtmlLink":"Merge pull request #2661 from rwest/debugdatabase"}},{"before":null,"after":"6109d8bb1b4ab34d65c5e014d0e4e6f6e233fdb6","ref":"refs/heads/pdep_fit_reverse","pushedAt":"2024-05-16T18:19:28.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"alongd","name":"Alon Grinberg Dana","path":"/alongd","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16158262?s=80&v=4"},"commit":{"message":"Send P in SI units to Chebyshev.fit_to_data() when reversing a rate\n\nThe Chebyshev.fit_to_data() method treats the Pmin and Pmax args as SI (Pa units), see here for example: `self.Pmin = (Pmin * 1e-5, \"bar\")`.\nMake sure we transmit the arguments in SI units and not in the arbitrary units they were defined in.","shortMessageHtmlLink":"Send P in SI units to Chebyshev.fit_to_data() when reversing a rate"}},{"before":"bfc1ba85d82d4d8b3cb602a8283bc40df8502400","after":"ef463c7c6a7754f7722ca46fb563495b2f254dc1","ref":"refs/heads/correlated_uncertainty","pushedAt":"2024-05-16T17:59:12.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"sevyharris","name":"Sevy Harris","path":"/sevyharris","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/30695172?s=80&v=4"},"commit":{"message":"add extra checks for parsing comments","shortMessageHtmlLink":"add extra checks for parsing comments"}},{"before":"4c20f8c8422aaa30031ce2d67e39f0e759af6aac","after":"ee4137cbdb3e53b044bc56a839df1731931fe512","ref":"refs/heads/halogens_combustion_rebase","pushedAt":"2024-05-15T18:40:38.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"rwest","name":"Richard West","path":"/rwest","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/93807?s=80&v=4"},"commit":{"message":"Better debugging messages for database errors.\n\nWhen there are issues in a database file, such as nan values here:\n uncertainty=RateUncertainty(mu=nan, var=nan,\nwhich may be due to a bug in the tree fitting, it was very hard to \nfind the cause of the error because the stack trace wouldn't tell you\nwhere the error was, and the file handle had been read by the time you\ncaught the exception.\nWith this change, we read the file to a variable, then try executing it,\nand catch and report any exceptions properly.","shortMessageHtmlLink":"Better debugging messages for database errors."}},{"before":"ec0a4b697cc4e1e08ad99176249399f7eb1fc35f","after":"20dbe270fea4af37ee337f1f21b9368478a96bcd","ref":"refs/heads/echem-rebase","pushedAt":"2024-05-14T19:10:49.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"ssun30","name":"Su Sun","path":"/ssun30","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/56568705?s=80&v=4"},"commit":{"message":"Fixed atomtype charge checking\n\nNow includes checks for negative charges","shortMessageHtmlLink":"Fixed atomtype charge checking"}},{"before":"2753ed85b806202db8742c0410f846c0526adbae","after":"6a5ebf45f20627af9a66ddd02918d9947bf19670","ref":"refs/heads/main","pushedAt":"2024-05-10T14:36:04.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"hwpang","name":"Hao-Wei Pang","path":"/hwpang","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/45482070?s=80&v=4"},"commit":{"message":"Merge pull request #2658 from sevyharris/thermo_allzeros_identical\n\nadd check for all zeros in thermo comparison","shortMessageHtmlLink":"Merge pull request #2658 from sevyharris/thermo_allzeros_identical"}},{"before":"49301c9ec199f81096450a3022f367ff813db841","after":"2753ed85b806202db8742c0410f846c0526adbae","ref":"refs/heads/main","pushedAt":"2024-05-07T21:47:19.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"JacksonBurns","name":"Jackson Burns","path":"/JacksonBurns","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/33505528?s=80&v=4"},"commit":{"message":"Merge pull request #2656 from sevyharris/diffmodels_surf_regression_patch\n\nPatch for surface regression diffmodels","shortMessageHtmlLink":"Merge pull request #2656 from sevyharris/diffmodels_surf_regression_p…"}},{"before":"05a28f825512b8a57035c404b614f853d1b88ad9","after":null,"ref":"refs/heads/test/new_ci","pushedAt":"2024-05-03T21:04:55.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"JacksonBurns","name":"Jackson Burns","path":"/JacksonBurns","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/33505528?s=80&v=4"}},{"before":"0c5630b49d049f2b6df5b4b411e974829a5457da","after":"ec0a4b697cc4e1e08ad99176249399f7eb1fc35f","ref":"refs/heads/echem-rebase","pushedAt":"2024-05-03T17:41:44.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"ssun30","name":"Su Sun","path":"/ssun30","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/56568705?s=80&v=4"},"commit":{"message":"temporary fix to an exponent overflow problem","shortMessageHtmlLink":"temporary fix to an exponent overflow problem"}},{"before":null,"after":"05a28f825512b8a57035c404b614f853d1b88ad9","ref":"refs/heads/test/new_ci","pushedAt":"2024-05-03T14:38:08.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"JacksonBurns","name":"Jackson Burns","path":"/JacksonBurns","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/33505528?s=80&v=4"},"commit":{"message":"dummy commit to trigger ci","shortMessageHtmlLink":"dummy commit to trigger ci"}},{"before":"0bb701ae636a16fd3a1167b265dac91a6f90b785","after":"656d684eab075a4cd6698715223f103873f94e05","ref":"refs/heads/fused_ring_constraints","pushedAt":"2024-05-02T08:53:22.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"alongd","name":"Alon Grinberg Dana","path":"/alongd","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16158262?s=80&v=4"},"commit":{"message":"Added the maximumFusedRings species constraint","shortMessageHtmlLink":"Added the maximumFusedRings species constraint"}},{"before":"042c944389dd754bedfd50028dd215a0ad079f61","after":"49301c9ec199f81096450a3022f367ff813db841","ref":"refs/heads/main","pushedAt":"2024-04-30T21:50:49.000Z","pushType":"pr_merge","commitsCount":4,"pusher":{"login":"JacksonBurns","name":"Jackson Burns","path":"/JacksonBurns","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/33505528?s=80&v=4"},"commit":{"message":"Merge pull request #2514 from sevyharris/catalytic_combustion_example\n\nAdd surface combustion example for regression testing","shortMessageHtmlLink":"Merge pull request #2514 from sevyharris/catalytic_combustion_example"}},{"before":"a027e42d834ab3b1be7ecb351844902ae22e02cb","after":"042c944389dd754bedfd50028dd215a0ad079f61","ref":"refs/heads/main","pushedAt":"2024-04-23T15:19:45.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"JacksonBurns","name":"Jackson Burns","path":"/JacksonBurns","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/33505528?s=80&v=4"},"commit":{"message":"Merge pull request #2653 from ReactionMechanismGenerator/fix_seed_mech_initial_species_core_edge\n\nFIx Handling of Initial Species with Seed Mechanisms","shortMessageHtmlLink":"Merge pull request #2653 from ReactionMechanismGenerator/fix_seed_mec…"}},{"before":"42e1ddcebfda07481d24ae97ed894cff70c98713","after":null,"ref":"refs/heads/fix_seed_mech_initial_species_core_edge","pushedAt":"2024-04-23T15:19:45.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"JacksonBurns","name":"Jackson Burns","path":"/JacksonBurns","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/33505528?s=80&v=4"}},{"before":null,"after":"42e1ddcebfda07481d24ae97ed894cff70c98713","ref":"refs/heads/fix_seed_mech_initial_species_core_edge","pushedAt":"2024-04-20T22:25:24.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"mjohnson541","name":"Matt Johnson","path":"/mjohnson541","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7773228?s=80&v=4"},"commit":{"message":"allow running enlarge on species that are already in core\n\nthis is exclusively for initial species that may be added to core during seed mech addition","shortMessageHtmlLink":"allow running enlarge on species that are already in core"}},{"before":"50df700f1ae12cc489ca7cde091630071486f5a6","after":"a027e42d834ab3b1be7ecb351844902ae22e02cb","ref":"refs/heads/main","pushedAt":"2024-04-18T17:32:17.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"JacksonBurns","name":"Jackson Burns","path":"/JacksonBurns","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/33505528?s=80&v=4"},"commit":{"message":"Merge pull request #2647 from donerancl/resonance_structure_bug\n\nUpdate resonance structure generation function to skip CuttingLabel correctly","shortMessageHtmlLink":"Merge pull request #2647 from donerancl/resonance_structure_bug"}},{"before":"751994498672924828aebc77301efc8bdfd80ace","after":"50df700f1ae12cc489ca7cde091630071486f5a6","ref":"refs/heads/main","pushedAt":"2024-04-17T15:41:57.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"sevyharris","name":"Sevy Harris","path":"/sevyharris","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/30695172?s=80&v=4"},"commit":{"message":"Merge pull request #2651 from Julian-Ufert/main\n\nresolved issue #2266","shortMessageHtmlLink":"Merge pull request #2651 from Julian-Ufert/main"}},{"before":"c5d557f336d1a6f42ce5681b2d9373838ce5aa41","after":"0c5630b49d049f2b6df5b4b411e974829a5457da","ref":"refs/heads/echem-rebase","pushedAt":"2024-04-17T03:02:45.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"ssun30","name":"Su Sun","path":"/ssun30","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/56568705?s=80&v=4"},"commit":{"message":"Add set_reference_potential for SurfaceChargeTransfer\nin to_rms","shortMessageHtmlLink":"Add set_reference_potential for SurfaceChargeTransfer"}},{"before":"a968a10b1fd17a1822a0d759e70cb9273a34ca78","after":"c33171f0ef5fd87cdbc369d26838b3f482067e09","ref":"refs/heads/gh-pages","pushedAt":"2024-04-15T01:10:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"Automated documentation rebuild","shortMessageHtmlLink":"Automated documentation rebuild"}},{"before":"6ed6b7e05825d0fa137520fd3ef1c1354a07e4ff","after":"751994498672924828aebc77301efc8bdfd80ace","ref":"refs/heads/main","pushedAt":"2024-04-15T00:36:56.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"JacksonBurns","name":"Jackson Burns","path":"/JacksonBurns","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/33505528?s=80&v=4"},"commit":{"message":"Merge pull request #2601 from donerancl/main\n\nAdd documentation about `speciesCuttingThreshold`","shortMessageHtmlLink":"Merge pull request #2601 from donerancl/main"}},{"before":"75ee20f290e0362d89f6356f32994bcaabebf7e9","after":"c5d557f336d1a6f42ce5681b2d9373838ce5aa41","ref":"refs/heads/echem-rebase","pushedAt":"2024-04-12T18:42:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ssun30","name":"Su Sun","path":"/ssun30","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/56568705?s=80&v=4"},"commit":{"message":"Add set_reference_potential for SurfaceChargeTransfer\nin to_rms","shortMessageHtmlLink":"Add set_reference_potential for SurfaceChargeTransfer"}},{"before":"0a02c322927f043c62ef1a2f6830580941c7344f","after":"a968a10b1fd17a1822a0d759e70cb9273a34ca78","ref":"refs/heads/gh-pages","pushedAt":"2024-04-09T22:54:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"Automated documentation rebuild","shortMessageHtmlLink":"Automated documentation rebuild"}},{"before":"e77d985c5a583e3b5e62a85c18ae4c3b3208ed3a","after":null,"ref":"refs/heads/fix_generate_reactions","pushedAt":"2024-04-09T22:08:52.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"JacksonBurns","name":"Jackson Burns","path":"/JacksonBurns","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/33505528?s=80&v=4"}},{"before":"a458b1deb3c26f69cff627396e3a635538c1cff6","after":"6ed6b7e05825d0fa137520fd3ef1c1354a07e4ff","ref":"refs/heads/main","pushedAt":"2024-04-09T22:08:51.000Z","pushType":"pr_merge","commitsCount":8,"pusher":{"login":"JacksonBurns","name":"Jackson Burns","path":"/JacksonBurns","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/33505528?s=80&v=4"},"commit":{"message":"Merge pull request #2632 from ReactionMechanismGenerator/fix_generate_reactions\n\nClean up some code for calculating degeneracy in kinetics codebase","shortMessageHtmlLink":"Merge pull request #2632 from ReactionMechanismGenerator/fix_generate…"}},{"before":"09f7354e293dc59e8c8a9bdb1ad2eb81e8ed6de7","after":"e77d985c5a583e3b5e62a85c18ae4c3b3208ed3a","ref":"refs/heads/fix_generate_reactions","pushedAt":"2024-04-04T16:59:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jonwzheng","name":"Jonathan Zheng","path":"/jonwzheng","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/30244073?s=80&v=4"},"commit":{"message":"raise error when checking for same reactants if provided more than 3 reactants","shortMessageHtmlLink":"raise error when checking for same reactants if provided more than 3 …"}},{"before":"339a7ed6f09e931716e8ecf7dd25ee518de84db1","after":"09f7354e293dc59e8c8a9bdb1ad2eb81e8ed6de7","ref":"refs/heads/fix_generate_reactions","pushedAt":"2024-04-04T14:54:15.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"JacksonBurns","name":"Jackson Burns","path":"/JacksonBurns","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/33505528?s=80&v=4"},"commit":{"message":"add resonance flag to find_degenerate_reactions for generate_reactions_from_families as well","shortMessageHtmlLink":"add resonance flag to find_degenerate_reactions for generate_reaction…"}},{"before":"996780b81098ee14dbb40f055855bf3f5f71f34f","after":"68dc92271f32b49409512fd2954c3595cea9001c","ref":"refs/heads/yaml_writer_addition","pushedAt":"2024-04-01T19:50:14.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"rwest","name":"Richard West","path":"/rwest","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/93807?s=80&v=4"},"commit":{"message":"Revert \"Redefine gas inside reactionTest. (needed?)\"\n\nThe reactionTest.py is failing. From the failure I can't see why\nthis would be the cause, but in the idea of change-one-thing-at-a-time\nI'm reverting the most recent change since I think the tests USED to pass.\n\nThis reverts commit a8eaa3babc0a0c14aff6a98678caa746e8c2f4c4.","shortMessageHtmlLink":"Revert \"Redefine gas inside reactionTest. (needed?)\""}},{"before":"564592394c0c8b5ee096feec11f9b498bd659109","after":"75ee20f290e0362d89f6356f32994bcaabebf7e9","ref":"refs/heads/echem-rebase","pushedAt":"2024-04-01T19:40:02.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"rwest","name":"Richard West","path":"/rwest","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/93807?s=80&v=4"},"commit":{"message":"Fixed syntax problems with SEI examples","shortMessageHtmlLink":"Fixed syntax problems with SEI examples"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAETYELTAA","startCursor":null,"endCursor":null}},"title":"Activity · ReactionMechanismGenerator/RMG-Py"}