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In the transition from KG2.8.4c to KG2.9.0c, where the preferred CURIE prefix for chemical substances seemed to switch to UNII, we noticed that the regression test test_ARAX_connect.py::test_connect_ulcerative_colitis_to_adalimumab failed, and to fix it, we had to change the drug node's CURIE ID from the old ID (DrugCentral:4904) to the new ID (UNII:FYS6T7F842). df7c8e1#diff-747ec5341c314b256f7d29d7239db0b4dceab85de33259046b1fbb813dfdc8b6
This change made the test pass once again. But from inspecting the ARAX logs, it looks like DrugCentral:4904 is supposed to be synonymized to the preferred CURIE UNII:FYS6T7F842. But it looks like the ARAX connect module isn't using synonymization? Can someone please check? Thanks.
The text was updated successfully, but these errors were encountered:
@mohsenht Can you look into this? In particular, it will definitely be critical to include synonymization in the ARAX connect module. We can follow up via slack or in person to discuss how to implement this.
In the transition from KG2.8.4c to KG2.9.0c, where the preferred CURIE prefix for chemical substances seemed to switch to UNII, we noticed that the regression test
test_ARAX_connect.py::test_connect_ulcerative_colitis_to_adalimumab
failed, and to fix it, we had to change the drug node's CURIE ID from the old ID (DrugCentral:4904
) to the new ID (UNII:FYS6T7F842
).df7c8e1#diff-747ec5341c314b256f7d29d7239db0b4dceab85de33259046b1fbb813dfdc8b6
This change made the test pass once again. But from inspecting the ARAX logs, it looks like
DrugCentral:4904
is supposed to be synonymized to the preferred CURIEUNII:FYS6T7F842
. But it looks like the ARAX connect module isn't using synonymization? Can someone please check? Thanks.The text was updated successfully, but these errors were encountered: