From 0bac88285eb7db173981b6db105755f41b6c0bb1 Mon Sep 17 00:00:00 2001
From: sloosbarnes <sbarnes@caltech.edu>
Date: Thu, 26 Jan 2017 14:53:45 -0800
Subject: [PATCH] minor edits

---
 code/analysis/Calculating slope at EC50.ipynb | 3024 ++++++++++-------
 1 file changed, 1790 insertions(+), 1234 deletions(-)

diff --git a/code/analysis/Calculating slope at EC50.ipynb b/code/analysis/Calculating slope at EC50.ipynb
index 5b016b7b..0d0fe24b 100644
--- a/code/analysis/Calculating slope at EC50.ipynb	
+++ b/code/analysis/Calculating slope at EC50.ipynb	
@@ -2,7 +2,7 @@
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   {
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-   "execution_count": 3,
+   "execution_count": 1,
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@@ -36,7 +36,7 @@
   },
   {
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+   "execution_count": 2,
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@@ -55,7 +55,7 @@
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@@ -75,7 +75,7 @@
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@@ -83,10 +83,10 @@
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@@ -125,7 +125,7 @@
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      },
      "metadata": {},
@@ -3491,10 +4047,10 @@
     "slope = log_slope(EC, Ka, Ki, epsilon, reps, O3)\n",
     "inter = intercept(np.log(EC), slope, Ka, Ki, epsilon, reps, O3)\n",
     "\n",
-    "plt.plot(np.log(IPTG), fold_change(IPTG, Ka=Ka, Ki=Ki, epsilon=epsilon, R=reps, epsilon_r=O3))\n",
-    "plt.plot(np.log(IPTG), slope * np.log(IPTG) + inter, ls = '--')\n",
+    "plt.semilogx(IPTG, fold_change(IPTG, Ka=Ka, Ki=Ki, epsilon=epsilon, R=reps, epsilon_r=O3))\n",
+    "plt.semilogx(IPTG, slope * np.log(IPTG) + inter, ls = '--')\n",
     "plt.title(r'$\\Delta \\varepsilon_{RA} = -9.7\\ k_BT$, $R = 260$')\n",
-    "plt.xlabel(r'$\\log{c}$ ($\\mu$M)')\n",
+    "plt.xlabel(r'[IPTG] ($\\mu$M)')\n",
     "plt.ylabel('fold-change')\n",
     "\n",
     "axes = plt.gca()\n",