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MD Express - Hello World - No dicom list printed with curl - MAPs not getting launched #142

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chezhia opened this issue Sep 29, 2023 · 0 comments

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@chezhia
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chezhia commented Sep 29, 2023

This issue was previously raised #90, but the suggested solution does not apply/work for me.

In the hello world example, after sending DICOMS to MONAI-Deploy, there is this step in the Readme.md:

> docker container list -a | grep alpine
# locate the container ID and run the following command
> docker logs {CONTAINER ID}
# expect a list of files to be printed
/var/monai/input/1.2.826.0.1.3680043.2.1125.1.19616861412188316212577695277886020/1.2.826.0.1.3680043.2.1125.1.34918616334750294149839565085991567/1.2.826.0.1.3680043.2.1125.1.60545822758941849948931508930806372.dcm.json
/var/monai/input/1.2.826.0.1.3680043.2.1125.1.19616861412188316212577695277886020/1.2.826.0.1.3680043.2.1125.1.34918616334750294149839565085991567/1.2.826.0.1.3680043.2.1125.1.60545822758941849948931508930806372.dcm

But this is the output I am getting:

===Configuring Informatics Gateway===
Informatics Gateway IP Address = 172.29.0.50
Informatics Gateway Port       = 5000
Informatics Gateway AE TItle   = MONAI-DEPLOY
Orthanc IP Address             = 172.29.0.100
Orthanc SCP Port               = 4242



Deleting existing MONAI Deploy AE Title
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100   233    0   233    0     0    749      0 --:--:-- --:--:-- --:--:--   749
{
  "name": "MONAI-DEPLOY",
  "aeTitle": "MONAI-DEPLOY",
  "grouping": "0020,000D",
  "workflows": [],
  "ignoredSopClasses": [],
  "allowedSopClasses": [],
  "timeout": 5,
  "id": "0d450300-5010-4711-9277-2d126fb2b7ca",
  "dateTimeCreated": "2023-09-29T18:20:57.431Z"
}

Deleting existing DICOM Source
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100   151    0   151    0     0   2841      0 --:--:-- --:--:-- --:--:--  2903
{
  "name": "ORTHANC",
  "aeTitle": "ORTHANC",
  "hostIp": "172.29.0.100",
  "id": "aa451300-ee23-4c60-bde3-45afae65c4b5",
  "dateTimeCreated": "2023-09-29T18:20:57.713Z"
}

Deleting existing DICOM Destination
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100   163    0   163    0     0   3664      0 --:--:-- --:--:-- --:--:--  3704
{
  "port": 4242,
  "name": "ORTHANC",
  "aeTitle": "ORTHANC",
  "hostIp": "172.29.0.100",
  "id": "5e2a2299-0cec-4fd4-b415-c892595647de",
  "dateTimeCreated": "2023-09-29T18:20:57.771Z"
}

Adding MONAI Deploy AE Title
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100   287    0   237  100    50    789    166 --:--:-- --:--:-- --:--:--   956
{
  "name": "MONAI-DEPLOY",
  "aeTitle": "MONAI-DEPLOY",
  "grouping": "0020,000D",
  "workflows": [],
  "ignoredSopClasses": [],
  "allowedSopClasses": [],
  "timeout": 5,
  "id": "264fc41b-bf31-4da5-b007-ff97ebe05120",
  "dateTimeCreated": "2023-09-29T19:46:06.5557054Z"
}

Adding DICOM Source
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100   220    0   155  100    65   2893   1213 --:--:-- --:--:-- --:--:--  4150
{
  "name": "ORTHANC",
  "aeTitle": "ORTHANC",
  "hostIp": "172.29.0.100",
  "id": "5a996e53-f217-4539-8733-293aeb947197",
  "dateTimeCreated": "2023-09-29T19:46:06.8520296Z"
}

Adding DICOM Destination
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100   245    0   167  100    78   3318   1549 --:--:-- --:--:-- --:--:--  5000
{
  "port": 4242,
  "name": "ORTHANC",
  "aeTitle": "ORTHANC",
  "hostIp": "172.29.0.100",
  "id": "9eb29248-5cd5-4762-af08-2ca420ba8f82",
  "dateTimeCreated": "2023-09-29T19:46:06.9279751Z"
}

Listing DICOM Sources
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100   153    0   153    0     0   5283      0 --:--:-- --:--:-- --:--:--  5464
[
  {
    "name": "ORTHANC",
    "aeTitle": "ORTHANC",
    "hostIp": "172.29.0.100",
    "id": "5a996e53-f217-4539-8733-293aeb947197",
    "dateTimeCreated": "2023-09-29T19:46:06.852Z"
  }
]

Listing DICOM Destinations
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100   165    0   165    0     0   6224      0 --:--:-- --:--:-- --:--:--  6346
[
  {
    "port": 4242,
    "name": "ORTHANC",
    "aeTitle": "ORTHANC",
    "hostIp": "172.29.0.100",
    "id": "9eb29248-5cd5-4762-af08-2ca420ba8f82",
    "dateTimeCreated": "2023-09-29T19:46:06.927Z"
  }
]

As discussed previously, this is the IGconfig container that is not active anymore. I am running this on a GPU server, so there is no NVIDIA container runtime issue. All my other containers show healthy status and the logs do not seem to show any obvious errors:

image

But, I think none of the MAP containers that are in the workflow definition are getting launched. I tried the Hello-world and Liver Tumor segmentation MAP - no segmentation output was received by ORTHANC, can someone help debug - please!

@chezhia chezhia changed the title MD Express - Hello World - No dicom list printed with curl MD Express - Hello World - No dicom list printed with curl - MAP image not getting launched Sep 29, 2023
@chezhia chezhia changed the title MD Express - Hello World - No dicom list printed with curl - MAP image not getting launched MD Express - Hello World - No dicom list printed with curl - MAPs not getting launched Sep 29, 2023
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