GEM does't work

[eshinesimida]

C:\Users\dpzc7\anaconda3\lib\site-packages\win32\lib\pywintypes.py:2: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses
import imp, sys, os
C:\Users\dpzc7\anaconda3\lib\site-packages\scipy\fft_init_.py:97: DeprecationWarning: The module numpy.dual is deprecated. Instead of using dual, use the functions directly from numpy or scipy.
from numpy.dual import register_func
C:\Users\dpzc7\anaconda3\lib\site-packages\scipy\sparse\sputils.py:17: DeprecationWarning: np.typeDict is a deprecated alias for np.sctypeDict.
supported_dtypes = [np.typeDict[x] for x in supported_dtypes]
C:\Users\dpzc7\anaconda3\lib\site-packages\scipy\special\orthogonal.py:81: DeprecationWarning: np.int is a deprecated alias for the builtin int. To silence this warning, use int by itself. Doing this will not modify any behavior and is safe. When replacing np.int, you may wish to use e.g. np.int64 or np.int32 to specify the precision. If you wish to review your current use, check the release note link for additional information.
Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
from numpy import (exp, inf, pi, sqrt, floor, sin, cos, around, int,
Traceback (most recent call last):
File "C:/Users/dpzc7/PycharmProjects/PaddleHelix-dev/apps/pretrained_compound/ChemRL/GEM/finetune_class.py", line 258, in
main(args)
File "C:/Users/dpzc7/PycharmProjects/PaddleHelix-dev/apps/pretrained_compound/ChemRL/GEM/finetune_class.py", line 117, in main
compound_encoder_config = load_json_config(args.compound_encoder_config)
File "C:\Users\dpzc7\PycharmProjects\PaddleHelix-dev\pahelix\utils\basic_utils.py", line 58, in load_json_config
return json.load(open(path, 'r'))
TypeError: expected str, bytes or os.PathLike object, not NoneType

Process finished with exit code 1

[fanxiaoyu0]

I have collate a code here for fine-tuning downstream tasks using GEM, hoping it can help you.(https://github.com/fanxiaoyu0/GEM)

[Noisyntrain]

hi eshinesimida,
According to the error info, it seemed that the compound_encoder_config is not configed properly. Can you post the command you use to run GEM or print the compound_encoder_config path?