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Add litpcba dataset config to the folder configs/dataset_configs (you need to specify where the raw litpcba dataset is like the pcqmv2.json do)
Now you can run the train_gem2.py to generate the 3d data and train GEM-2 with LIT-PCBA. Note that processed data is stored in the data_cache_dir that you pass to the script.
Hope this can be helpful to you.
Hi, did you guys test GEM-2 model on LIT-PCBA by generating 3D coordinates from SMILES string?
If then, can I find a code for it?
Thank you.
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