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Several warnings when downloading data for Tutorial 1 #52

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kinow opened this issue Jul 24, 2021 · 1 comment
Open

Several warnings when downloading data for Tutorial 1 #52

kinow opened this issue Jul 24, 2021 · 1 comment

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@kinow
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kinow commented Jul 24, 2021

When executing wget or curl with wget -q -O- "https://github.com/PMCC-BioinformaticsCore/janis-workshops/raw/master/janis-data.tar" | tar -x (removed the z, see #51 for more) the file is successfully downloaded and uncompressed.

However, there are several warnings in the terminal, which can be confusing to users. e.g.:

kinow@ranma:/tmp$ wget -q -O- "https://github.com/PMCC-BioinformaticsCore/janis-workshops/raw/master/janis-data.tar" | tar -x
tar: Ignoring unknown extended header keyword 'LIBARCHIVE.creationtime'
tar: Ignoring unknown extended header keyword 'SCHILY.dev'
tar: Ignoring unknown extended header keyword 'SCHILY.ino'
tar: Ignoring unknown extended header keyword 'SCHILY.nlink'
tar: Ignoring unknown extended header keyword 'SCHILY.dev'
tar: Ignoring unknown extended header keyword 'SCHILY.ino'
tar: Ignoring unknown extended header keyword 'SCHILY.nlink'
tar: Ignoring unknown extended header keyword 'SCHILY.dev'
tar: Ignoring unknown extended header keyword 'SCHILY.ino'
tar: Ignoring unknown extended header keyword 'SCHILY.nlink'
tar: Ignoring unknown extended header keyword 'SCHILY.dev'
tar: Ignoring unknown extended header keyword 'SCHILY.ino'
tar: Ignoring unknown extended header keyword 'SCHILY.nlink'
tar: Ignoring unknown extended header keyword 'SCHILY.dev'
tar: Ignoring unknown extended header keyword 'SCHILY.ino'
tar: Ignoring unknown extended header keyword 'SCHILY.nlink'
tar: Ignoring unknown extended header keyword 'SCHILY.dev'
tar: Ignoring unknown extended header keyword 'SCHILY.ino'
tar: Ignoring unknown extended header keyword 'SCHILY.nlink'
tar: Ignoring unknown extended header keyword 'SCHILY.dev'
tar: Ignoring unknown extended header keyword 'SCHILY.ino'
tar: Ignoring unknown extended header keyword 'SCHILY.nlink'
tar: Ignoring unknown extended header keyword 'SCHILY.dev'
tar: Ignoring unknown extended header keyword 'SCHILY.ino'
tar: Ignoring unknown extended header keyword 'SCHILY.nlink'
tar: Ignoring unknown extended header keyword 'SCHILY.dev'
tar: Ignoring unknown extended header keyword 'SCHILY.ino'
tar: Ignoring unknown extended header keyword 'SCHILY.nlink'
tar: Ignoring unknown extended header keyword 'SCHILY.dev'
tar: Ignoring unknown extended header keyword 'SCHILY.ino'
tar: Ignoring unknown extended header keyword 'SCHILY.nlink'
tar: Ignoring unknown extended header keyword 'SCHILY.dev'
tar: Ignoring unknown extended header keyword 'SCHILY.ino'
tar: Ignoring unknown extended header keyword 'SCHILY.nlink'
tar: Ignoring unknown extended header keyword 'SCHILY.dev'
tar: Ignoring unknown extended header keyword 'SCHILY.ino'
tar: Ignoring unknown extended header keyword 'SCHILY.nlink'
tar: Ignoring unknown extended header keyword 'SCHILY.dev'
tar: Ignoring unknown extended header keyword 'SCHILY.ino'
tar: Ignoring unknown extended header keyword 'SCHILY.nlink'
tar: Ignoring unknown extended header keyword 'SCHILY.dev'
tar: Ignoring unknown extended header keyword 'SCHILY.ino'
tar: Ignoring unknown extended header keyword 'SCHILY.nlink'
tar: Ignoring unknown extended header keyword 'SCHILY.dev'
tar: Ignoring unknown extended header keyword 'SCHILY.ino'
tar: Ignoring unknown extended header keyword 'SCHILY.nlink'

The files were created correct on my machine, so I did a quick search, and I think it could be caused by the file being created on a MacOS machine? Ref: http://lifeonubuntu.com/tar-errors-ignoring-unknown-extended-header-keyword/

I did as the page above suggests, and just ignored it. No errors following the rest of the tutorial due to the data, so I assume it's safe to ignore it, but just in case it's simple to regenerate the files perhaps in another OS?

Thanks
Bruno

@illusional
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Hey @kinow, sorry for the late response. You're absolutely right, these were generating on a Mac, and the warnings can be ignored, I'll keep this open so next time the materials are regenerated on a linux machine. Thanks!

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