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cwl/wdl basename methods #17

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matthdsm opened this issue Mar 17, 2020 · 2 comments
Open

cwl/wdl basename methods #17

matthdsm opened this issue Mar 17, 2020 · 2 comments

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@matthdsm
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Hi,

Is there a way to tap into the basename/filename manipulation features from CWL/WDL from janis?
I know about the built in string formatting, but I'm looking for way to extract a sample id from a filename, which built in into both CWL and WDL.

Any ideas?
Thanks
M
@illusional
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Currently there isn't a way to do this, but it's intended to be an operator in #8, similar to how WDL requires a function from the standard library to perform.

@matthdsm
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Great! I'll monitor the upcoming features so I can test them.

Cheers
M

@illusional illusional mentioned this issue Mar 26, 2020
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Expressions in Janis PMCC-BioinformaticsCore/janis-core
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@matthdsm @illusional