add option to counting

[ercius]

Can we add an option to electron_count which will bypass the threshold calculation?

It would be great to have keywords for background_threshold and xray_threshold. These are meant to be the values which are currently determined by the sigma inputs with Gaussian fitting.

If the new parameters are input then the Gaussian fitting is skipped and the values are used directly. It would essentially skip the line res = _image.calculate_thresholds(*args) and use the thresholds directly from the user.

[cjh1]

@ercius Should we implement this, shouldn't bee too hard todo.

[ercius]

Yes, please. I think it would be great to have more fine grained control.