You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
mpicc -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 -I/build/petsc-3.19.4/include -I/build/petsc-3.19.4/arch-linux-c-debug/include -Wl,-export-dynamic ex19.c -Wl,-rpath,/build/petsc-3.19.4/arch-linux-c-debug/lib -L/build/petsc-3.19.4/arch-linux-c-debug/lib -Wl,-rpath,/nix/store/vr8njqmvv9z1wkwrqk7jy56x6lb43l31-openmpi-4.1.6/lib -L/nix/store/vr8njqmvv9z1wkwrqk7jy56x6lb43l31-openmpi-4.1.6/lib -Wl,-rpath,/nix/store/kcyymk901cy4p2x2sqhml7nb9zhab5f8-libfabric-1.21.0-dev/lib -L/nix/store/kcyymk901cy4p2x2sqhml7nb9zhab5f8-libfabric-1.21.0-dev/lib -Wl,-rpath,/nix/store/cl9wrjrc75ir36331icq4i7r4998jiwr-pmix-5.0.1/lib -L/nix/store/cl9wrjrc75ir36331icq4i7r4998jiwr-pmix-5.0.1/lib -Wl,-rpath,/nix/store/vwrz2sj2xxb7jnq38mplqs7fq7dk6x66-libnl-3.8.0-dev/lib -L/nix/store/vwrz2sj2xxb7jnq38mplqs7fq7dk6x66-libnl-3.8.0-dev/lib -Wl,-rpath,/nix/store/hlk3hfg1j6j3rbmbsa8f0g3nnxzvbwvf-libpsm2-12.0.1/lib -L/nix/store/hlk3hfg1j6j3rbmbsa8f0g3nnxzvbwvf-libpsm2-12.0.1/lib -Wl,-rpath,/nix/store/cy6dh661j89s69mxlbi604z06arqb474-blas-3/lib -L/nix/store/cy6dh661j89s69mxlbi604z06arqb474-blas-3/lib -Wl,-rpath,/nix/store/ssjp1ryvwndqf4wa8530zfxpprrp2g5i-lapack-3/lib -L/nix/store/ssjp1ryvwndqf4wa8530zfxpprrp2g5i-lapack-3/lib -Wl,-rpath,/nix/store/35pq4hr29c3sl79lgfwgsvd9nwzyp4am-glibc-2.39-5/lib -L/nix/store/35pq4hr29c3sl79lgfwgsvd9nwzyp4am-glibc-2.39-5/lib -Wl,-rpath,/nix/store/nn152mgpdfcw92b3b03g9kmnlpd9jris-gcc-13.2.0/lib/gcc/x86_64-unknown-linux-gnu/13.2.0 -L/nix/store/nn152mgpdfcw92b3b03g9kmnlpd9jris-gcc-13.2.0/lib/gcc/x86_64-unknown-linux-gnu/13.2.0 -Wl,-rpath,/nix/store/f1ii69v7p27z1r5zybmlbld3bdzm6a5f-gcc-13.2.0-lib/lib -L/nix/store/f1ii69v7p27z1r5zybmlbld3bdzm6a5f-gcc-13.2.0-lib/lib -Wl,-rpath,/nix/store/k8njqq4rc3knarvp24waf7isbvxrpi7d-gfortran-13.2.0-lib/lib -L/nix/store/k8njqq4rc3knarvp24waf7isbvxrpi7d-gfortran-13.2.0-lib/lib -Wl,-rpath,/nix/store/s8i61f6l2xr63kc1wfba5065wwdkayxa-gfortran-wrapper-13.2.0/bin -L/nix/store/s8i61f6l2xr63kc1wfba5065wwdkayxa-gfortran-wrapper-13.2.0/bin -Wl,-rpath,/nix/store/bkhd01jbwzxqjn2qgi95vxhncfrivgga-gfortran-13.2.0/lib/gcc/x86_64-unknown-linux-gnu/13.2.0 -L/nix/store/bkhd01jbwzxqjn2qgi95vxhncfrivgga-gfortran-13.2.0/lib/gcc/x86_64-unknown-linux-gnu/13.2.0 -Wl,-rpath,/nix/store/bkhd01jbwzxqjn2qgi95vxhncfrivgga-gfortran-13.2.0/lib64 -L/nix/store/bkhd01jbwzxqjn2qgi95vxhncfrivgga-gfortran-13.2.0/lib64 -Wl,-rpath,/nix/store/bkhd01jbwzxqjn2qgi95vxhncfrivgga-gfortran-13.2.0/lib -L/nix/store/bkhd01jbwzxqjn2qgi95vxhncfrivgga-gfortran-13.2.0/lib -Wl,-rpath,/nix/store/xyghgs8nf62l24z78qn3273yv82gm0si-petsc-3.19.4/lib -lpetsc -llapack -lblas -lm -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -lquadmath -o ex19
In file included from /nix/store/ij144ma6vs8acil8r9hgr8xkb1dp9azg-glibc-2.39-5-dev/include/bits/libc-header-start.h:33,
from /nix/store/ij144ma6vs8acil8r9hgr8xkb1dp9azg-glibc-2.39-5-dev/include/limits.h:26,
from /nix/store/nn152mgpdfcw92b3b03g9kmnlpd9jris-gcc-13.2.0/lib/gcc/x86_64-unknown-linux-gnu/13.2.0/include/limits.h:205,
from /nix/store/nn152mgpdfcw92b3b03g9kmnlpd9jris-gcc-13.2.0/lib/gcc/x86_64-unknown-linux-gnu/13.2.0/include/syslimits.h:7,
from /nix/store/nn152mgpdfcw92b3b03g9kmnlpd9jris-gcc-13.2.0/lib/gcc/x86_64-unknown-linux-gnu/13.2.0/include/limits.h:34,
from /build/petsc-3.19.4/include/petscsystypes.h:16,
from /build/petsc-3.19.4/include/petscsys.h:44,
from /build/petsc-3.19.4/include/petscvec.h:9,
from /build/petsc-3.19.4/include/petscmat.h:7,
from /build/petsc-3.19.4/include/petscpc.h:7,
from /build/petsc-3.19.4/include/petscksp.h:7,
from /build/petsc-3.19.4/include/petscsnes.h:7,
from ex19.c:68:
/nix/store/ij144ma6vs8acil8r9hgr8xkb1dp9azg-glibc-2.39-5-dev/include/features.h:414:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
414 | # warning _FORTIFY_SOURCE requires compiling with optimization (-O)
| ^~~~~~~
Possible error running C/C++ src/snes/tutorials/ex19 with 1 MPI process
See https://petsc.org/release/faq/
[1714248497.209873] [localhost:12150:0] tcp_iface.c:893 UCX ERROR scandir(/sys/class/net) failed: No such file or directory
[1714248497.212895] [localhost:12150:0] tcp_iface.c:893 UCX ERROR scandir(/sys/class/net) failed: No such file or directory
lid velocity = 0.0016, prandtl # = 1., grashof # = 1.
Number of SNES iterations = 2
Possible error running C/C++ src/snes/tutorials/ex19 with 2 MPI processes
See https://petsc.org/release/faq/
[1714248498.625277] [localhost:12179:0] tcp_iface.c:893 UCX ERROR scandir(/sys/class/net) failed: No such file or directory
[1714248498.625969] [localhost:12180:0] tcp_iface.c:893 UCX ERROR scandir(/sys/class/net) failed: No such file or directory
[1714248498.628325] [localhost:12180:0] tcp_iface.c:893 UCX ERROR scandir(/sys/class/net) failed: No such file or directory
[1714248498.628301] [localhost:12179:0] tcp_iface.c:893 UCX ERROR scandir(/sys/class/net) failed: No such file or directory
lid velocity = 0.0016, prandtl # = 1., grashof # = 1.
Number of SNES iterations = 2
Possible error running Fortran example src/snes/tutorials/ex5f with 1 MPI process
See https://petsc.org/release/faq/
[1714248502.674702] [localhost:12286:0] tcp_iface.c:893 UCX ERROR scandir(/sys/class/net) failed: No such file or directory
[1714248502.676990] [localhost:12286:0] tcp_iface.c:893 UCX ERROR scandir(/sys/class/net) failed: No such file or directory
Number of SNES iterations = 3
Completed test examples
Error while running make check
make[1]: *** [makefile:123: check] Error 1
make: *** [GNUmakefile:17: check] Error 2
Additional context
Bisecting shows that the build started to fail after an update to ucx (#306020)
Steps To Reproduce
Steps to reproduce the behavior:
petsc
Build log
These are the last few lines of the build logs.
Additional context
Bisecting shows that the build started to fail after an update to
ucx
(#306020)Looks like something related to
tcp_iface.c
Notify maintainers
@cburstedde (listed in
meta.maintainers
)@twesterhout (last update to the package)
Metadata
Please run
nix-shell -p nix-info --run "nix-info -m"
and paste the result.Add a 👍 reaction to issues you find important.
The text was updated successfully, but these errors were encountered: