Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

amyloidPET_FBP_TP0 #16

Open
hannah-saber opened this issue Aug 2, 2022 · 8 comments
Open

amyloidPET_FBP_TP0 #16

hannah-saber opened this issue Aug 2, 2022 · 8 comments
Assignees
Labels
question Further information is requested

Comments

@hannah-saber
Copy link

Hi,
I download amyloidPET_FBP_TP0 datasets, and want to /NiftyPET-master/docs/tutortials/demo.ipynb, but datain shows many files such as hmumap/pCT/T1lbl/T1nii/T1N4 not in datasets which I downloaded. So when I run mu_h=nipet.hdw_mumap, there is mistake. How can I find the missed files?
Thanks!
Hannah

@casperdcl
Copy link
Member

did you modify the folderin path (top of cell [2]) to point to wherever you downloaded & extracted the data?

@casperdcl casperdcl added the question Further information is requested label Aug 2, 2022
@casperdcl casperdcl self-assigned this Aug 2, 2022
@hannah-saber
Copy link
Author

Hi,
Thanks for your reply! I do modify the path of folderin to where I download amyloidPET_FBP_TP0. And the niftyout/mumap-hdw/hmumap.npz should be in download file? or generate by operation?
Hannah

@casperdcl
Copy link
Member

Are you talking about the latest version (2) of this data?

@hannah-saber
Copy link
Author

yessss! Thanks for your link, I will download this data. And I have another question about ACR PHANTOM IMAGING, it import acr_params as pars for getting dictionary, but where should I pip install acr_params?
Thanks again!
Hannah

@casperdcl
Copy link
Member

casperdcl commented Aug 2, 2022

/CC @pjmark (#15) ^

@hannah-saber
Copy link
Author

/CC @pjmark (#15) ^

Thanks!!!

@sarabanoo
Copy link

hi. I download version 2 of amyloidPET_FBP_TP0 datasets . but I'm looking for umap_PT_2291734.v.hdr . I need this file for attenuation map . how can i find this file?

@pjmark
Copy link
Member

pjmark commented Nov 13, 2022

these are siemens mu-maps. Email me at p.markiewicz (at) ucl.ac.uk for a workaround.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
question Further information is requested
Projects
None yet
Development

No branches or pull requests

4 participants