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[New Check]: Spike times are increasing #405

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alessandratrapani
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@alessandratrapani alessandratrapani commented Sep 18, 2023 •
edited by CodyCBakerPhD

Relate to Issue #394
Add check function for ascending spike times

  • add check function
  • add unit tests
  • add check function documentation
  • update CHANGELOG.md

@alessandratrapani alessandratrapani added the category: new check a new best practices check to apply to all NWBFiles and their contents label Sep 18, 2023
@alessandratrapani alessandratrapani changed the title Fix issue #394 check if spike times are increasing [New Check]: Spike times are increasing Sep 18, 2023
@alessandratrapani alessandratrapani self-assigned this Sep 18, 2023
@CodyCBakerPhD CodyCBakerPhD linked an issue Sep 18, 2023 that may be closed by this pull request
[Add Check]: Check if spike times are increasing #394
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@bendichter bendichter removed a link to an issue Sep 18, 2023
[Add Check]: Check if spike times are increasing #394
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@bendichter bendichter linked an issue Sep 18, 2023 that may be closed by this pull request
[Add Check]: Check if spike times are increasing #394
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Thanks @alessandratrapani. We also need units tests

@alessandratrapani @CodyCBakerPhD
index shifting strategy
38a8507 
Co-authored-by: Cody Baker <51133164+CodyCBakerPhD@users.noreply.github.com>
@alessandratrapani
add unit test missing spike times
e7d0585
@bendichter bendichter marked this pull request as ready for review September 25, 2023 16:56
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@alessandratrapani can you please add an entry here explaining this best practice in plain English?

@bendichter bendichter self-requested a review September 29, 2023 14:08
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bendichter approved these changes Sep 29, 2023
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lgtm!

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@alessandratrapani , can you resolve the conflicts?

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CodyCBakerPhD
CodyCBakerPhD requested changes Sep 29, 2023
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src/nwbinspector/checks/ecephys.py


@register_check(importance=Importance.BEST_PRACTICE_VIOLATION, neurodata_type=Units)
def check_ascending_spike_times(units_table: Units):
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We are still testing the performance of this, since it's the first data heavy check to be added without options to control how much data is loaded

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@CodyCBakerPhD CodyCBakerPhD CodyCBakerPhD requested changes

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[Add Check]: Check if spike times are increasing
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