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Machine learning functionality - clustering #34

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HussainAther opened this issue Dec 2, 2020 · 5 comments · May be fixed by #58
Open

Machine learning functionality - clustering #34

HussainAther opened this issue Dec 2, 2020 · 5 comments · May be fixed by #58
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@JohnGriffiths
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bhg2020 Brainhack global 2020 sub-project enhancement New feature or request
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EEG-Notebooks Project Board
Milestone
q2-2021

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@HussainAther
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Use signal processing metrics to create machine learning functionality for EEG-Notebooks and compare clustering algorithms. We can use scikit t-SNE optimization techniques (https://scikit-learn.org/stable/modules/manifold.html#optimizing-t-sne), Pyriemann Embedding (https://pyriemann.readthedocs.io/en/latest/auto_examples/ERP/plot_embedding_EEG.html#sphx-glr-auto-examples-erp-plot-embedding-eeg-py), diffusion_map (https://pydiffmap.readthedocs.io/en/master/reference/diffusion_map.html), and other ideas (anything else?)

Follow my work on Twitch: https://www.twitch.tv/hussainather
@JohnGriffiths JohnGriffiths added this to To do in EEG-Notebooks Project Board via automation Dec 2, 2020
@JohnGriffiths JohnGriffiths added the bhg2020 Brainhack global 2020 sub-project label Dec 2, 2020
@HussainAther
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HussainAther commented Dec 4, 2020 •
edited

  • Show plots for different ML techniques (t-SNE, TangentSpace, Embedding).
  • Have presentation ready by 16:00 EST.

@HussainAther
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HussainAther commented Dec 5, 2020 •
edited

Finishing up the MLapproaches.ipynb file to turn it into a page of the documentation for the NeurotechX repository.

  • Add more background info on what this documentation is meant to be so the reader can understand.
  • Get the content finalized and tidied. Rearrange the cells into an organized order and make sure each of them can run on both sets of data.
  • Export the file as a .py file for sphinx gallery.
  • Make a PR. Follow the style of other pull requests.

@JohnGriffiths
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Awesome!

I suggest call the final file

examples/visual_n170/04r__n170_clustering.py

@HussainAther
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Thanks! Would you like me to add pyDiffMap to the requirements.txt file?

@JohnGriffiths JohnGriffiths linked a pull request Mar 19, 2021 that will close this issue
Machine learning functionality - clustering (Issue #34) #58
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@JohnGriffiths JohnGriffiths added this to the q2-2021 milestone Mar 19, 2021
@JohnGriffiths JohnGriffiths self-assigned this Mar 19, 2021
@JohnGriffiths
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@HussainAther I believe this is now summarized in the PR

#58

We'll review that and resume comments there :)

@JohnGriffiths JohnGriffiths added the enhancement New feature or request label Mar 19, 2021
@JohnGriffiths JohnGriffiths moved this from To do to On Hold in EEG-Notebooks Project Board Jun 16, 2022
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@JohnGriffiths JohnGriffiths

Labels
bhg2020 Brainhack global 2020 sub-project enhancement New feature or request
Projects
EEG-Notebooks Project Board
Status: On Hold
EEG-Notebooks Project Board
  
On Hold
Milestone
q2-2021
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Machine learning functionality - clustering (Issue #34) HussainAther/eeg-notebooks
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@JohnGriffiths @HussainAther