02/02/2023

[oreHGA]

We'd need to update project dependencies

• Deprecated seaborn function, update dependencies

Changing from sns.tsplot to sns.line should fix this

WARNING: /home/runner/work/eeg-notebooks/eeg-notebooks/examples/visual_n170/01r__n170_viz.py failed to execute correctly: Traceback (most recent call last):
  File "/home/runner/work/eeg-notebooks/eeg-notebooks/examples/visual_n170/01r__n170_viz.py", line 102, in <module>
    fig, ax = plot_conditions(epochs, conditions=conditions,
  File "/home/runner/work/eeg-notebooks/eeg-notebooks/eegnb/analysis/utils.py", line 280, in plot_conditions
    sns.tsplot(
  File "/opt/hostedtoolcache/Python/3.8.16/x64/lib/python3.8/site-packages/seaborn/timeseries.py", line 297, in tsplot
    x = df_c.columns.values.astype(np.float)
  File "/opt/hostedtoolcache/Python/3.8.16/x64/lib/python3.8/site-packages/numpy/__init__.py", line 284, in __getattr__
    raise AttributeError("module {!r} has no attribute "
AttributeError: module 'numpy' has no attribute 'float'

• Deprecated MNE function
  from mne.time_frequency import psd_welch,tfr_morlet
  ImportError: cannot import name 'psd_welch' from 'mne.time_frequency' (/opt/hostedtoolcache/Python/3.8.16/x64/lib/python3.8/site-packages/mne/time_frequency/init.py)

(example failed build - https://github.com/NeuroTechX/eeg-notebooks/actions/runs/3960058420/jobs/6783681172)

[oreHGA]

Made changes in this PR - #220

Current error :

python examples/visual_n170/01r__n170_viz.py

Stack trace: 
  File "examples/visual_n170/01r__n170_viz.py", line 105, in <module>
    channel_order=[1,0,2,3]) # reordering of epochs.ch_names according to [[0,2],[1,3]] of subplot axes
  File "/workspaces/eeg-notebooks/eegnb/analysis/utils.py", line 285, in plot_conditions
    ax=axes[ch],
  File "/opt/conda/envs/eeg-notebooks/lib/python3.7/site-packages/seaborn/relational.py", line 622, in lineplot
    legend=legend,
  File "/opt/conda/envs/eeg-notebooks/lib/python3.7/site-packages/seaborn/relational.py", line 365, in __init__
    super().__init__(data=data, variables=variables)
  File "/opt/conda/envs/eeg-notebooks/lib/python3.7/site-packages/seaborn/_oldcore.py", line 640, in __init__
    self.assign_variables(data, variables)
  File "/opt/conda/envs/eeg-notebooks/lib/python3.7/site-packages/seaborn/_oldcore.py", line 702, in assign_variables
    data, **variables,
  File "/opt/conda/envs/eeg-notebooks/lib/python3.7/site-packages/seaborn/_oldcore.py", line 962, in _assign_variables_longform
    plot_data = pd.DataFrame(plot_data)
  File "/opt/conda/envs/eeg-notebooks/lib/python3.7/site-packages/pandas/core/frame.py", line 614, in __init__
    mgr = dict_to_mgr(data, index, columns, dtype=dtype, copy=copy, typ=manager)
  File "/opt/conda/envs/eeg-notebooks/lib/python3.7/site-packages/pandas/core/internals/construction.py", line 465, in dict_to_mgr
    arrays, data_names, index, columns, dtype=dtype, typ=typ, consolidate=copy
  File "/opt/conda/envs/eeg-notebooks/lib/python3.7/site-packages/pandas/core/internals/construction.py", line 124, in arrays_to_mgr
    arrays = _homogenize(arrays, index, dtype)
  File "/opt/conda/envs/eeg-notebooks/lib/python3.7/site-packages/pandas/core/internals/construction.py", line 590, in _homogenize
    val, index, dtype=dtype, copy=False, raise_cast_failure=False
  File "/opt/conda/envs/eeg-notebooks/lib/python3.7/site-packages/pandas/core/construction.py", line 576, in sanitize_array
    subarr = _sanitize_ndim(subarr, data, dtype, index, allow_2d=allow_2d)
  File "/opt/conda/envs/eeg-notebooks/lib/python3.7/site-packages/pandas/core/construction.py", line 627, in _sanitize_ndim
    raise ValueError("Data must be 1-dimensional")
ValueError: Data must be 1-dimensional